| SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ... Genome research 31 (4), 635-644, 2021 | 57 | 2021 |
| Th1 and Th2 cytokine profiles induced by hepatitis C virus F protein in peripheral blood mononuclear cells from chronic hepatitis C patients M Yue, X Deng, X Zhai, K Xu, J Kong, J Zhang, Z Zhou, X Yu, X Xu, Y Liu, ... Immunology Letters 152 (2), 89-95, 2013 | 33 | 2013 |
| Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data Y Liu, J Kearney, M Mahmoud, B Kille, FJ Sedlazeck, TJ Treangen Nature communications 13 (1), 1321, 2022 | 26 | 2022 |
| Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater N Sapoval, Y Liu, EG Lou, L Hopkins, KB Ensor, R Schneider, LB Stadler, ... Nature Communications 14 (1), 2834, 2023 | 20 | 2023 |
| De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee Y Liu, RAL Elworth, MD Jochum, KM Aagaard, TJ Treangen Nature Communications 13 (1), 6799, 2022 | 18 | 2022 |
| Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets B Kille, Y Liu, N Sapoval, M Nute, L Rauchwerger, N Amato, TJ Treangen 2021 IEEE International Parallel and Distributed Processing Symposium …, 2021 | 5 | 2021 |
| An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates AM Mc Cartney, M Mahmoud, M Jochum, DP Agustinho, B Zorman, ... F1000Research 10, 246, 2021 | 4 | 2021 |
| Crykey: rapid identification of SARS-CoV-2 cryptic mutations in wastewater Y Liu, N Sapoval, P Gallego-García, L Tomás, D Posada, TJ Treangen, ... Nature Communications 15 (1), 4545, 2024 | 3 | 2024 |
| Intrahost-diversity of influenza A virus in upper and lower respiratory tract derived samples from a college community N Sapoval, PJB de Mesquita, Y Liu, R Wang, TR Liu, J Garza, T Williams, ... medRxiv, 2021.10. 27.21265424, 2021 | 2 | 2021 |
| Squeegee: de-novo identification of reagent and laboratory induced microbial contaminants in low biomass microbiomes Y Liu, RAL Elworth, MD Jochum, KM Aagaard, TJ Treangen bioRxiv, 2021.05. 06.442815, 2021 | 2 | 2021 |
| SeqScreen-Nano: a computational platform for rapid, in-field characterization of previously unseen pathogens A Balaji, Y Liu, MG Nute, B Hu, A Kappell, DS LeSassier, GD Godbold, ... bioRxiv, 2023.02. 10.528096, 2023 | 1 | 2023 |