| Efficient ancestry and mutation simulation with msprime 1.0 F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ... Genetics 220 (3), iyab229, 2022 | 277 | 2022 |
| Inferring the joint demographic history of multiple populations: beyond the diffusion approximation J Jouganous, W Long, AP Ragsdale, S Gravel Genetics 206 (3), 1549-1567, 2017 | 229 | 2017 |
| A community-maintained standard library of population genetic models JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ... eLife 9, e54967, 2020 | 150 | 2020 |
| A weakly structured stem for human origins in Africa AP Ragsdale, TD Weaver, EG Atkinson, EG Hoal, M Möller, BM Henn, ... Nature 617 (7962), 755-763, 2023 | 90 | 2023 |
| Models of archaic admixture and recent history from two-locus statistics AP Ragsdale, S Gravel PLoS genetics 15 (6), e1008204, 2019 | 70 | 2019 |
| Genomic inferences of domestication events are corroborated by written records in Brassica rapa X Qi, H An, AP Ragsdale, TE Hall, RN Gutenkunst, J Chris Pires, ... Molecular ecology 26 (13), 3373-3388, 2017 | 70 | 2017 |
| Mexican Biobank advances population and medical genomics of diverse ancestries M Sohail, MJ Palma-Martínez, AY Chong, CD Quinto-Cortés, ... Nature 622 (7984), 775-783, 2023 | 67 | 2023 |
| Accounting for long-range correlations in genome-wide simulations of large cohorts D Nelson, J Kelleher, AP Ragsdale, C Moreau, G McVean, S Gravel PLoS genetics 16 (5), e1008619, 2020 | 60 | 2020 |
| Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes AC McAlvay, AP Ragsdale, ME Mabry, X Qi, KA Bird, P Velasco, H An, ... Molecular biology and evolution 38 (8), 3358-3372, 2021 | 50 | 2021 |
| Nonparametric coalescent inference of mutation spectrum history and demography WS DeWitt, KD Harris, AP Ragsdale, K Harris Proceedings of the National Academy of Sciences 118 (21), e2013798118, 2021 | 47 | 2021 |
| Sloppiness and the geometry of parameter space BK Mannakee, AP Ragsdale, MK Transtrum, RN Gutenkunst Uncertainty in biology: a computational modeling approach, 271-299, 2016 | 47 | 2016 |
| Inferring genome-wide correlations of mutation fitness effects between populations X Huang, AL Fortier, AJ Coffman, TJ Struck, MN Irby, JE James, ... Molecular Biology and Evolution 38 (10), 4588-4602, 2021 | 38* | 2021 |
| Demes: a standard format for demographic models G Gower, AP Ragsdale, G Bisschop, RN Gutenkunst, M Hartfield, ... Genetics 222 (3), iyac131, 2022 | 35 | 2022 |
| Unbiased estimation of linkage disequilibrium from unphased data AP Ragsdale, S Gravel Molecular Biology and Evolution 37 (3), 923-932, 2020 | 34 | 2020 |
| Inferring demographic history using two-locus statistics AP Ragsdale, RN Gutenkunst Genetics 206 (2), 1037-1048, 2017 | 32 | 2017 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 30 | 2023 |
| Genomic inference using diffusion models and the allele frequency spectrum AP Ragsdale, C Moreau, S Gravel Current Opinion in Genetics & Development 53, 140-147, 2018 | 28 | 2018 |
| Local fitness and epistatic effects lead to distinct patterns of linkage disequilibrium in protein-coding genes AP Ragsdale Genetics 221 (4), iyac097, 2022 | 23* | 2022 |
| Triallelic population genomics for inferring correlated fitness effects of same site nonsynonymous mutations AP Ragsdale, AJ Coffman, PH Hsieh, TJ Struck, RN Gutenkunst Genetics 203 (1), 513-523, 2016 | 22 | 2016 |
| Diversification, spread, and admixture of octoploid strawberry in the Western Hemisphere KA Bird, MA Hardigan, AP Ragsdale, SJ Knapp, R VanBuren, PP Edger American Journal of Botany 108 (11), 2269-2281, 2021 | 15 | 2021 |