Towards the online computer-aided design of catalytic pockets L Falivene, Z Cao, A Petta, L Serra, A Poater, R Oliva, V Scarano, ... Nature Chemistry 11 (10), 872-879, 2019 | 995 | 2019 |
SambVca 2. A web tool for analyzing catalytic pockets with topographic steric maps L Falivene, R Credendino, A Poater, A Petta, L Serra, R Oliva, V Scarano, ... Organometallics 35 (13), 2286-2293, 2016 | 828 | 2016 |
COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes A Vangone, R Spinelli, V Scarano, L Cavallo, R Oliva Bioinformatics 27 (20), 2915-2916, 2011 | 292 | 2011 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
Structural and kinetic characterization of native laccases from Pleurotus ostreatus, Rigidoporus lignosus, and Trametes trogii AM Garzillo, MC Colao, V Buonocore, R Oliva, L Falcigno, M Saviano, ... Journal of protein chemistry 20, 191-201, 2001 | 151 | 2001 |
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 128 | 2019 |
Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions R Oliva, L Cavallo, A Tramontano Nucleic acids research 34 (3), 865-879, 2006 | 109 | 2006 |
Mg2+ binding and archaeosine modification stabilize the G15–C48 Levitt base pair in tRNAs R Oliva, A Tramontano, L Cavallo rna 13 (9), 1427-1436, 2007 | 105 | 2007 |
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 104 | 2021 |
An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies M Chawla, R Oliva, JM Bujnicki, L Cavallo Nucleic acids research 43 (14), 6714-6729, 2015 | 87 | 2015 |
Electrostatics of aquaporin and aquaglyceroporin channels correlates with their transport selectivity R Oliva, G Calamita, JM Thornton, M Pellegrini-Calace Proceedings of the National Academy of Sciences 107 (9), 4135-4140, 2010 | 67 | 2010 |
Occurrence and stability of lone pair–π stacking interactions between ribose and nucleobases in functional RNAs M Chawla, E Chermak, Q Zhang, JM Bujnicki, R Oliva, L Cavallo Nucleic acids research 45 (19), 11019-11032, 2017 | 62 | 2017 |
Frequency and Effect of the Binding of Mg2+, Mn2+, and Co2+ Ions on the Guanine Base in Watson−Crick and Reverse Watson−Crick Base Pairs R Oliva, L Cavallo The Journal of Physical Chemistry B 113 (47), 15670-15678, 2009 | 61 | 2009 |
A novel method for improved accuracy of transcription factor binding site prediction AM Khamis, O Motwalli, R Oliva, BR Jankovic, YA Medvedeva, H Ashoor, ... Nucleic acids research 46 (12), e72-e72, 2018 | 51 | 2018 |
Understanding high-salt and cold adaptation of a polyextremophilic enzyme R Karan, S Mathew, R Muhammad, DB Bautista, M Vogler, J Eppinger, ... Microorganisms 8 (10), 1594, 2020 | 49 | 2020 |
Higher order structural effects stabilizing the reverse Watson–Crick Guanine-Cytosine base pair in functional RNAs M Chawla, S Abdel-Azeim, R Oliva, L Cavallo Nucleic acids research 42 (2), 714-726, 2014 | 49 | 2014 |
Targeting CD34+ cells of the inflamed synovial endothelium by guided nanoparticles for the treatment of rheumatoid arthritis F Colombo, P Durigutto, L De Maso, S Biffi, B Belmonte, C Tripodo, ... Journal of autoimmunity 103, 102288, 2019 | 48 | 2019 |
Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 47 | 2023 |
Ranking multiple docking solutions based on the conservation of inter‐residue contacts R Oliva, A Vangone, L Cavallo Proteins: Structure, Function, and Bioinformatics 81 (9), 1571-1584, 2013 | 45 | 2013 |
Immunoinformatics-aided design of a peptide based multiepitope vaccine targeting glycoproteins and membrane proteins against monkeypox virus N Akhtar, V Kaushik, RK Grewal, AK Wani, C Suwattanasophon, ... Viruses 14 (11), 2374, 2022 | 42 | 2022 |