オープン アクセスを義務付けられた論文 - Veli Mäkinen詳細
一般公開: 53 件
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
委任: US National Institutes of Health, National Natural Science Foundation of …
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
V Ahola, R Lehtonen, P Somervuo, L Salmela, P Koskinen, P Rastas, ...
Nature communications 5 (1), 4737, 2014
委任: European Commission
On the complexity of string matching for graphs
M Equi, R Grossi, V Mäkinen, A Tomescu
International Colloquium on Automata, Languages and Programming, 55: 1--55: 15, 2019
委任: Academy of Finland
Fast in‐memory XPath search using compressed indexes
D Arroyuelo, F Claude, S Maneth, V Mäkinen, G Navarro, K Nguyễn, ...
Software: Practice and Experience 45 (3), 399-434, 2015
委任: Academy of Finland
Towards pan-genome read alignment to improve variation calling
D Valenzuela, T Norri, N Välimäki, E Pitkänen, V Mäkinen
BMC genomics 19, 123-130, 2018
委任: Academy of Finland
Discovery of potential causative mutations in human coding and noncoding genome with the interactive software BasePlayer
R Katainen, I Donner, T Cajuso, E Kaasinen, K Palin, V Mäkinen, ...
Nature Protocols 13 (11), 2580-2600, 2018
委任: Academy of Finland, European Commission
On the complexity of minimum path cover with subpath constraints for multi-assembly
R Rizzi, AI Tomescu, V Mäkinen
BMC bioinformatics 15, 1-11, 2014
委任: Academy of Finland
Graphs cannot be indexed in polynomial time for sub-quadratic time string matching, unless SETH fails
M Equi, V Mäkinen, AI Tomescu
Theoretical Computer Science 975, 114128, 2023
委任: Academy of Finland, European Commission
Sparse dynamic programming on DAGs with small width
V Mäkinen, AI Tomescu, A Kuosmanen, T Paavilainen, T Gagie, R Chikhi
ACM Transactions on Algorithms (TALG) 15 (2), 1-21, 2019
委任: Academy of Finland
Accurate spliced alignment of long RNA sequencing reads
K Sahlin, V Mäkinen
Bioinformatics 37 (24), 4643-4651, 2021
委任: Academy of Finland
Gap filling as exact path length problem
L Salmela, K Sahlin, V Mäkinen, AI Tomescu
Journal of Computational Biology 23 (5), 347-361, 2016
委任: Academy of Finland, Swedish Research Council
Bacterial genomic epidemiology with mixed samples
T Mäklin, T Kallonen, J Alanko, Ø Samuelsen, K Hegstad, V Mäkinen, ...
Microbial genomics 7 (11), 000691, 2021
委任: Academy of Finland, European Commission, Research Council of Norway
Bidirectional variable-order de Bruijn graphs
D Belazzougui, T Gagie, V Mäkinen, M Previtali, SJ Puglisi
LATIN 2016: Theoretical Informatics: 12th Latin American Symposium, Ensenada …, 2016
委任: Academy of Finland, Government of Italy
Forbidden patterns
J Fischer, T Gagie, T Kopelowitz, M Lewenstein, V Mäkinen, L Salmela, ...
Latin American Symposium on Theoretical Informatics, 327-337, 2012
委任: German Research Foundation
Using minimum path cover to boost dynamic programming on DAGs: co-linear chaining extended
A Kuosmanen, T Paavilainen, T Gagie, R Chikhi, A Tomescu, V Mäkinen
Research in Computational Molecular Biology: 22nd Annual International …, 2018
委任: Academy of Finland
Explaining a weighted DAG with few paths for solving genome-guided multi-assembly
AI Tomescu, T Gagie, A Popa, R Rizzi, A Kuosmanen, V Mäkinen
IEEE/ACM transactions on computational biology and bioinformatics 12 (6 …, 2015
委任: Academy of Finland
A safe and complete algorithm for metagenomic assembly
N Obscura Acosta, V Mäkinen, AI Tomescu
Algorithms for Molecular Biology 13, 1-12, 2018
委任: Academy of Finland
Metaflow: Metagenomic profiling based on whole-genome coverage analysis with min-cost flows
A Sobih, AI Tomescu, V Mäkinen
International Conference on Research in Computational Molecular Biology, 111-121, 2016
委任: Academy of Finland
Repeat-and error-aware comparison of deletions
R Wittler, T Marschall, A Schönhuth, V Mäkinen
Bioinformatics 31 (18), 2947-2954, 2015
委任: German Research Foundation, Academy of Finland
Chaining for accurate alignment of erroneous long reads to acyclic variation graphs
J Ma, M Cáceres, L Salmela, V Mäkinen, AI Tomescu
Bioinformatics 39 (8), btad460, 2023
委任: Academy of Finland, European Commission
公開と助成金に関する情報は、コンピュータ プログラムによって自動的に決定されます