| Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris: The Tabula Muris Consortium N Schaum, J Karkanias, NF Neff, AP May, SR Quake, T Wyss-Coray, ... Nature 562 (7727), 367, 2018 | 1095* | 2018 |
| Noise2self: Blind denoising by self-supervision J Batson, L Royer International Conference on Machine Learning, 524-533, 2019 | 745 | 2019 |
| Twice-ramanujan sparsifiers JD Batson, DA Spielman, N Srivastava Proceedings of the forty-first annual ACM symposium on Theory of computing …, 2009 | 619* | 2009 |
| Spectral sparsification of graphs: theory and algorithms J Batson, DA Spielman, N Srivastava, SH Teng Communications of the ACM 56 (8), 87-94, 2013 | 256 | 2013 |
| FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences J Quan, C Langelier, A Kuchta, J Batson, N Teyssier, A Lyden, S Caldera, ... Nucleic acids research 47 (14), e83-e83, 2019 | 219 | 2019 |
| Community transmission of severe acute respiratory syndrome coronavirus 2 disproportionately affects the Latinx population during shelter-in-place in San Francisco G Chamie, C Marquez, E Crawford, J Peng, M Petersen, D Schwab, ... Clinical Infectious Diseases 73 (Supplement_2), S127-S135, 2021 | 128* | 2021 |
| Patch2Self: Denoising Diffusion MRI with Self-Supervised Learning S Fadnavis, J Batson, E Garyfallidis Advances in Neural Information Processing Systems 33, 16293-16303, 2020 | 118 | 2020 |
| Single mosquito metatranscriptomics recovers mosquito species, blood meal sources, and microbial cargo, including viral dark matter J Batson, G Dudas, E Haas-Stapleton, AL Kistler, LM Li, P Logan, ... BioRxiv, 2020.02. 10.942854, 2020 | 100* | 2020 |
| Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by reverse transcription-PCR M Vanaerschot, SA Mann, JT Webber, J Kamm, SM Bell, J Bell, SN Hong, ... Journal of Clinical Microbiology 59 (1), 10.1128/jcm. 02369-20, 2020 | 79* | 2020 |
| A link-splitting spectral sequence in Khovanov homology J Batson, C Seed | 67 | 2015 |
| Nonorientable slice genus can be arbitrarily large J Batson Mathematical Research Letters 21 (3), 423-436, 2014 | 50* | 2014 |
| Topological obstructions to autoencoding J Batson, CG Haaf, Y Kahn, DA Roberts Journal of High Energy Physics 2021 (4), 1-43, 2021 | 49 | 2021 |
| Complete genome sequence of a novel coronavirus (SARS-CoV-2) isolate from Bangladesh S Saha, R Malaker, MSI Sajib, M Hasanuzzaman, H Rahman, ZB Ahmed, ... Microbiology resource announcements 9 (24), 10.1128/mra. 00568-20, 2020 | 41 | 2020 |
| Molecular cross-validation for single-cell RNA-seq J Batson, L Royer, J Webber BioRxiv, 786269, 2019 | 25 | 2019 |
| Rapid deployment of SARS-CoV-2 testing: The CLIAHUB ED Crawford, I Acosta, V Ahyong, EC Anderson, S Arevalo, D Asarnow, ... PLoS pathogens 16 (10), e1008966, 2020 | 23 | 2020 |
| Denoising of diffusion MRI in the cervical spinal cord–effects of denoising strategy and acquisition on intra-cord contrast, signal modeling, and feature conspicuity KG Schilling, S Fadnavis, J Batson, M Visagie, AJE Combes, ... NeuroImage 266, 119826, 2023 | 11* | 2023 |
| Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California G Stoddard, A Black, P Ayscue, D Lu, J Kamm, K Bhatt, L Chan, AL Kistler, ... BMC Public Health 22 (1), 456, 2022 | 11 | 2022 |
| Image deconvolution via noise-tolerant self-supervised inversion H Kobayashi, AC Solak, J Batson, LA Royer arXiv preprint arXiv:2006.06156, 2020 | 11 | 2020 |
| Genomic epidemiology and transmission dynamics of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in congregate healthcare facilities in Santa Clara County, California T MacCannell, J Batson, B Bonin, KC Astha, R Quenelle, B Strong, W Lin, ... Clinical Infectious Diseases 74 (5), 829-835, 2022 | 10* | 2022 |
| Accumulated metagenomic studies reveal recent migration, whole genome evolution, and undiscovered diversity of orthomyxoviruses G Dudas, J Batson Journal of virology 97 (10), e01056-23, 2023 | 3 | 2023 |