Life and death in the soil microbiome: how ecological processes influence biogeochemistry NW Sokol, E Slessarev, GL Marschmann, A Nicolas, SJ Blazewicz, ... Nature Reviews Microbiology 20 (7), 415-430, 2022 | 572 | 2022 |
Methane-derived carbon flows into host–virus networks at different trophic levels in soil S Lee, ET Sieradzki, AM Nicolas, RL Walker, MK Firestone, C Hazard, ... Proceedings of the National Academy of Sciences 118 (32), e2105124118, 2021 | 53 | 2021 |
Soil Candidate Phyla Radiation bacteria encode components of aerobic metabolism and co-occur with nanoarchaea in the rare biosphere of rhizosphere grassland communities AM Nicolas, AL Jaffe, EE Nuccio, ME Taga, MK Firestone, JF Banfield Msystems 6 (4), e01205-20, 2021 | 30 | 2021 |
Identification of a novel cobamide remodeling enzyme in the beneficial human gut bacterium Akkermansia muciniphila KC Mok, OM Sokolovskaya, AM Nicolas, ZF Hallberg, A Deutschbauer, ... Mbio 11 (6), 10.1128/mbio. 02507-20, 2020 | 24 | 2020 |
A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil AM Nicolas, ET Sieradzki, J Pett-Ridge, JF Banfield, ME Taga, ... Nature Communications 14 (1), 5835, 2023 | 16 | 2023 |
Functional succession of actively growing soil microorganisms during rewetting is shaped by precipitation history ET Sieradzki, A Greenlon, AM Nicolas, MK Firestone, J Pett-Ridge, ... bioRxiv, 2022.06. 28.498032, 2022 | 9 | 2022 |
Unexpected diversity of CPR bacteria and nanoarchaea in the rare biosphere of rhizosphere-associated grassland soil AM Nicolas, AL Jaffe, EE Nuccio, ME Taga, MK Firestone, JF Banfield BioRxiv, 2020.07. 13.194282, 2020 | 6 | 2020 |
Isotope-enrichment reveals active viruses follow microbial host dynamics during rewetting of a California grassland soil AM Nicolas, ET Sieradzki, J Pett-Ridge, JF Banfield, ME Taga, ... | 4 | 2022 |
Methane-derived carbon flow through host-virus trophic networks in soil S Lee, ET Sieradzki, AM Nicolas, RL Walker, MK Firestone, C Hazard, ... bioRxiv, 2020.12. 16.423115, 2020 | 3 | 2020 |
Phylogenetic distribution and experimental characterization of corrinoid production and dependence in soil bacterial isolates ZI Alvarez-Aponte, AM Govindaraju, ZF Hallberg, AM Nicolas, MA Green, ... The ISME Journal, wrae068, 2024 | 2 | 2024 |
Soil microbial community response to corrinoids is shaped by a natural reservoir of vitamin B12 ZF Hallberg, AM Nicolas, ZI Alvarez-Aponte, KC Mok, ET Sieradzki, ... The ISME Journal, wrae094, 2024 | 1 | 2024 |
Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil PF Chuckran, K Estera-Molina, AM Nicolas, ET Sieradzki, P Dijkstra, ... bioRxiv, 2024.06. 28.601247, 2024 | | 2024 |
The biogeographical distribution of bacterial genomic traits and their relationship to growth and activity in soils P Chuckran, K Estera-Molina, C Flagg, N Goudner, A Nicolas, JR Propster, ... AGU23, 2023 | | 2023 |
Tracking transcription in soil microbial communities during the Birch Effect P Chuckran, M Firestone, AM Nicolas, ET Sieradzki, J Pett-Ridge, ... EGU General Assembly Conference Abstracts, EGU-11025, 2023 | | 2023 |
Microbes Persist: How Soil Moisture Regimes Shape the Ecophysiology and Biogeochemical Effects of Wild Soil Microbiomes J Pett-Ridge, N Sokol, A Greenlon, MM Foley, E Sieradzki, A Nicolas, ... AGU Fall Meeting Abstracts 2022, GC26D-04, 2022 | | 2022 |
Methane-derived carbon flow through host-virus trophic networks G Nicol, S Lee, C Hazard, E Sieradzki, A Nicolas, MK Firestone AGU Fall Meeting 2020, 2020 | | 2020 |
Methane-derived carbon flow through host-virus trophic networks S Lee, G Nicol, C Hazard, E Sieradzki, A Nicolas, MK Firestone AGU Fall Meeting Abstracts 2020, B124-03, 2020 | | 2020 |
Stable Isotope Probing Reveals Microbial Responses to Changing Redox Conditions in a Tropical Forest Soil R Hestrin, A Campbell, J Kimbrel, B Koch, A Bhattacharyya, Y Lin, ... AGU Fall Meeting Abstracts 2020, B125-06, 2020 | | 2020 |
Directing Traffic in the Rhizosphere: How Phage and Fauna Shape the Flow and Fate of Root Carbon through Microbial Pathways M Firestone, K Estera-Molina, M Yuan, C Fossum, A Nicolas, N Xiao, ... Dr. Mary K. Firestone/Univ. of California, Berkeley, 2020 | | 2020 |
Stable-isotope probing and metagenomic analysis demonstrates individual host-virus interactions in soil methanotroph communities S Lee, E Sieradzki, A Nicolas, MK Firestone, C Hazard, GW Nicol 4th Thünen Symposium on Soil Metagenomics, 2019 | | 2019 |