| The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy L Guillou, D Bachar, S Audic, D Bass, C Berney, L Bittner, C Boutte, ... Nucleic acids research 41 (D1), D597-D604, 2012 | 1778 | 2012 |
| Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water T Stoeck, D Bass, M Nebel, R Christen, MDM Jones, HW Breiner, ... Molecular ecology 19, 21-31, 2010 | 1453 | 2010 |
| CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms J Pawlowski, S Audic, S Adl, D Bass, L Belbahri, C Berney, SS Bowser, ... PLoS biology 10 (11), e1001419, 2012 | 606 | 2012 |
| Patterns of rare and abundant marine microbial eukaryotes R Logares, S Audic, D Bass, L Bittner, C Boutte, R Christen, JM Claverie, ... Current Biology 24 (8), 813-821, 2014 | 485 | 2014 |
| Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing R Massana, A Gobet, S Audic, D Bass, L Bittner, C Boutte, A Chambouvet, ... Environmental microbiology 17 (10), 4035-4049, 2015 | 408 | 2015 |
| Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments T Stoeck, S Epstein Applied and Environmental Microbiology 69 (5), 2657-2663, 2003 | 272 | 2003 |
| Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea) T Stoeck, GT Taylor, SS Epstein Applied and Environmental Microbiology 69 (9), 5656-5663, 2003 | 233 | 2003 |
| Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap T Cordier, L Alonso‐Sáez, L Apothéloz‐Perret‐Gentil, E Aylagas, ... Molecular Ecology 30 (13), 2937-2958, 2021 | 228 | 2021 |
| Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities T Stoeck, A Behnke, R Christen, L Amaral-Zettler, MJ Rodriguez-Mora, ... BMC biology 7, 1-20, 2009 | 225 | 2009 |
| A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples T Stoeck, B Hayward, GT Taylor, R Varela, SS Epstein Protist 157 (1), 31-43, 2006 | 218 | 2006 |
| Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions A Behnke, M Engel, R Christen, M Nebel, RR Klein, T Stoeck Environmental microbiology 13 (2), 340-349, 2011 | 205 | 2011 |
| Microbial eukaryotes in the hypersaline anoxic L'Atalante deep‐sea basin E Alexander, A Stock, HW Breiner, A Behnke, J Bunge, MM Yakimov, ... Environmental Microbiology 11 (2), 360-381, 2009 | 176 | 2009 |
| Microeukaryote Community Patterns along an O2/H2S Gradient in a Supersulfidic Anoxic Fjord (Framvaren, Norway) A Behnke, J Bunge, K Barger, HW Breiner, V Alla, T Stoeck Applied and Environmental Microbiology 72 (5), 3626-3636, 2006 | 174 | 2006 |
| Embracing environmental genomics and machine learning for routine biomonitoring T Cordier, A Lanzén, L Apothéloz-Perret-Gentil, T Stoeck, J Pawlowski Trends in microbiology 27 (5), 387-397, 2019 | 173 | 2019 |
| Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring M Sagova-Mareckova, J Boenigk, A Bouchez, K Cermakova, T Chonova, ... Water research 191, 116767, 2021 | 163 | 2021 |
| Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation CS Jebaraj, C Raghukumar, A Behnke, T Stoeck FEMS Microbiology Ecology 71 (3), 399-412, 2010 | 157 | 2010 |
| Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring T Cordier, D Forster, Y Dufresne, CIM Martins, T Stoeck, J Pawlowski Molecular ecology resources 18 (6), 1381-1391, 2018 | 155 | 2018 |
| A molecular approach to identify active microbes in environmental eukaryote clone libraries T Stoeck, A Zuendorf, HW Breiner, A Behnke Microbial Ecology 53, 328-339, 2007 | 143 | 2007 |
| Comparing the hyper‐variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity M Dunthorn, J Klier, J Bunge, T Stoeck Journal of Eukaryotic Microbiology 59 (2), 185-187, 2012 | 137 | 2012 |
| Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods J Pawlowski, K Bruce, K Panksep, FI Aguirre, S Amalfitano, ... Science of the Total Environment 818, 151783, 2022 | 125 | 2022 |
