| The state of the world's mangrove forests: past, present, and future DA Friess, K Rogers, CE Lovelock, KW Krauss, SE Hamilton, SY Lee, ... Annual Review of Environment and Resources 44 (1), 89-115, 2019 | 665 | 2019 |
| miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments M Wen, Y Shen, S Shi, T Tang BMC bioinformatics 13, 1-10, 2012 | 472 | 2012 |
| Statistical tests for detecting positive selection by utilizing high-frequency variants K Zeng, YX Fu, S Shi, CI Wu Genetics 174 (3), 1431-1439, 2006 | 392 | 2006 |
| The birth and death of microRNA genes in Drosophila J Lu, Y Shen, Q Wu, S Kumar, B He, S Shi, RW Carthew, SM Wang, CI Wu Nature genetics 40 (3), 351-355, 2008 | 294 | 2008 |
| Representation of dormant and active microbial dynamics for ecosystem modeling G Wang, MA Mayes, L Gu, CW Schadt PloS one 9 (2), e89252, 2014 | 292* | 2014 |
| The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication J Lu, T Tang, H Tang, J Huang, S Shi, CI Wu Trends in Genetics 22 (3), 126-131, 2006 | 270 | 2006 |
| RNA sequencing shows no dosage compensation of the active X-chromosome Y Xiong, X Chen, Z Chen, X Wang, S Shi, X Wang, J Zhang, X He Nature genetics 42 (12), 1043-1047, 2010 | 219 | 2010 |
| Two evolutionary histories in the genome of rice: the roles of domestication genes Z He, W Zhai, H Wen, T Tang, Y Wang, X Lu, AJ Greenberg, RR Hudson, ... PLoS genetics 7 (6), e1002100, 2011 | 216 | 2011 |
| Microbial communities evolve faster in extreme environments SJ Li, ZS Hua, LN Huang, J Li, SH Shi, LX Chen, JL Kuang, J Liu, M Hu, ... Scientific reports 4 (1), 6205, 2014 | 166 | 2014 |
| Coevolution in action: disruptive selection on egg colour in an avian brood parasite and its host C Yang, W Liang, Y Cai, S Shi, F Takasu, AP Møller, A Antonov, F Fossøy, ... PLoS One 5 (5), e10816, 2010 | 166 | 2010 |
| Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data Y Tao, J Ruan, SH Yeh, X Lu, Y Wang, W Zhai, J Cai, S Ling, Q Gong, ... Proceedings of the National Academy of Sciences 108 (29), 12042-12047, 2011 | 163 | 2011 |
| The global significance of biodiversity science in China: an overview X Mi, G Feng, Y Hu, J Zhang, L Chen, RT Corlett, AC Hughes, S Pimm, ... National Science Review 8 (7), nwab032, 2021 | 162 | 2021 |
| Adaptation to salinity in mangroves: Implication on the evolution of salt-tolerance S Liang, RC Zhou, SS Dong, SH Shi Chinese Science Bulletin 53 (11), 1708-1715, 2008 | 144 | 2008 |
| Phylogenetic analysis of the Lythraceae based on four gene regions and morphology SA Graham, J Hall, K Sytsma, SH Shi International journal of plant sciences 166 (6), 995-1017, 2005 | 142 | 2005 |
| Flooding greatly affects the diversity of arbuscular mycorrhizal fungi communities in the roots of wetland plants Y Wang, Y Huang, Q Qiu, G Xin, Z Yang, S Shi PloS one 6 (9), e24512, 2011 | 138 | 2011 |
| Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa Z He, X Li, M Yang, X Wang, C Zhong, NC Duke, CI Wu, S Shi National Science Review 6 (2), 275-288, 2019 | 133 | 2019 |
| Compound tests for the detection of hitchhiking under positive selection K Zeng, S Shi, CI Wu Molecular biology and evolution 24 (8), 1898-1908, 2007 | 130 | 2007 |
| The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing S Xu, Z He, Z Zhang, Z Guo, W Guo, H Lyu, J Li, M Yang, Z Du, Y Huang, ... National Science Review 4 (5), 721-734, 2017 | 123 | 2017 |
| Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes X Chen, Z Chen, H Chen, Z Su, J Yang, F Lin, S Shi, X He Science 335 (6073), 1235-1238, 2012 | 109 | 2012 |
| Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication Y Yu, T Tang, Q Qian, Y Wang, M Yan, D Zeng, B Han, CI Wu, S Shi, J Li The Plant Cell 20 (11), 2946-2959, 2008 | 109 | 2008 |
