| Structure and function of the bacterial root microbiota in wild and domesticated barley D Bulgarelli, R Garrido-Oter, PC Münch, A Weiman, J Dröge, Y Pan, ... Cell host & microbe 17 (3), 392-403, 2015 | 1405 | 2015 |
| Functional overlap of the Arabidopsis leaf and root microbiota Y Bai, DB Müller, G Srinivas, R Garrido-Oter, E Potthoff, M Rott, ... Nature 528 (7582), 364-369, 2015 | 1260 | 2015 |
| Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ... Nature microbiology 2 (2), 1-12, 2016 | 454 | 2016 |
| Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi S Hacquard, B Kracher, K Hiruma, PC Münch, R Garrido-Oter, MR Thon, ... Nature communications 7 (1), 11362, 2016 | 283 | 2016 |
| Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life T Vatanen, DR Plichta, J Somani, PC Münch, TD Arthur, AB Hall, S Rudolf, ... Nature microbiology 4 (3), 470-479, 2019 | 226 | 2019 |
| In vitro interaction network of a synthetic gut bacterial community AS Weiss, AG Burrichter, AC Durai Raj, A von Strempel, C Meng, ... The ISME journal 16 (4), 1095-1109, 2022 | 123 | 2022 |
| Reproducible colonization of germ-free mice with the oligo-mouse-microbiota in different animal facilities C Eberl, D Ring, PC Münch, M Beutler, M Basic, EC Slack, M Schwarzer, ... Frontiers in microbiology 10, 2999, 2020 | 114 | 2020 |
| Rapid and accurate identification of ribosomal RNA sequences via deep learning ZL Deng, PC Münch, R Mreches, AC McHardy Nucleic acids research 50 (10), e60-e60, 2022 | 81 | 2022 |
| Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms S Krause, A Bremges, PC Münch, AC McHardy, J Gescher Scientific reports 7 (1), 3289, 2017 | 54 | 2017 |
| Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium. Nat Microbiol 2: 16215 S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ... | 49 | 2016 |
| Transcriptome-wide analysis uncovers the targets of the RNA-binding protein MSI2 and effects of MSI2's RNA-binding activity on IL-6 signaling S Duggimpudi, A Kloetgen, SK Maney, PC Münch, K Hezaveh, ... Journal of Biological Chemistry 293 (40), 15359-15369, 2018 | 48 | 2018 |
| Strain identification and quantitative analysis in microbial communities AR Ghazi, PC Münch, D Chen, J Jensen, C Huttenhower Journal of Molecular Biology 434 (15), 167582, 2022 | 25 | 2022 |
| Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses ZL Deng, A Dhingra, A Fritz, J Götting, PC Münch, L Steinbrück, TF Schulz, ... Briefings in bioinformatics 22 (3), bbaa123, 2021 | 22 | 2021 |
| DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection E Asgari, PC Münch, TR Lesker, AC McHardy, MRK Mofrad Bioinformatics 35 (14), 2498-2500, 2019 | 19* | 2019 |
| A self-supervised deep learning method for data-efficient training in genomics HA Gündüz, M Binder, XY To, R Mreches, B Bischl, AC McHardy, ... Communications Biology 6 (1), 928, 2023 | 18 | 2023 |
| Identification of natural CRISPR systems and targets in the human microbiome PC Münch, EA Franzosa, B Stecher, AC McHardy, C Huttenhower Cell host & microbe 29 (1), 94-106. e4, 2021 | 18 | 2021 |
| Biochemical and bioinformatic methods for elucidating the role of RNA–protein interactions in posttranscriptional regulation A Kloetgen, PC Muench, A Borkhardt, JI Hoell, AC McHardy Briefings in functional genomics 14 (2), 102-114, 2015 | 18 | 2015 |
| Neither black nor white: do altered intestinal microbiota reflect chronic liver disease severity? F Goeser, P Münch, TR Lesker, PL Lutz, B Krämer, DJ Kaczmarek, ... Gut 70 (2), 438-440, 2021 | 10 | 2021 |
| Evolutionary stabilization of cooperative toxin production through a bacterium-plasmid-phage interplay S Spriewald, E Stadler, BA Hense, PC Münch, AC McHardy, AS Weiss, ... MBio 11 (4), 10.1128/mbio. 00912-20, 2020 | 10 | 2020 |
| Assessing computational predictions of antimicrobial resistance phenotypes from microbial genomes K Hu, F Meyer, ZL Deng, E Asgari, TH Kuo, PC Münch, AC McHardy Briefings in Bioinformatics 25 (3), bbae206, 2024 | 9 | 2024 |
Alice Carolyn McHardyHelmholtz Centre for Infection Research, Germanyכתובת אימייל מאומתת בדומיין helmholtz-hzi.de