עקוב אחר
Rob Patro
Rob Patro
Associate Professor, Department of Computer Science, University of Maryland
כתובת אימייל מאומתת בדומיין cs.umd.edu - דף הבית
כותרת
צוטט על ידי
צוטט על ידי
שנה
Salmon provides fast and bias-aware quantification of transcript expression‏
R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford‏
Nature methods 14 (4), 417-419, 2017‏
102082017
Bioconda: sustainable and comprehensive software distribution for the life sciences‏
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...‏
Nature methods 15 (7), 475-476, 2018‏
12842018
TransRate: reference-free quality assessment of de novo transcriptome assemblies‏
R Smith-Unna, C Boursnell, R Patro, JM Hibberd, S Kelly‏
Genome research 26 (8), 1134-1144, 2016‏
8152016
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms‏
R Patro, SM Mount, C Kingsford‏
Nature biotechnology 32 (5), 462-464, 2014‏
8002014
Best practices for single-cell analysis across modalities‏
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...‏
Nature Reviews Genetics 24 (8), 550-572, 2023‏
6012023
Tximeta: Reference sequence checksums for provenance identification in RNA-seq‏
MI Love, C Soneson, PF Hickey, LK Johnson, NT Pierce, L Shepherd, ...‏
PLoS computational biology 16 (2), e1007664, 2020‏
2752020
Identification of alternative topological domains in chromatin‏
D Filippova, R Patro, G Duggal, C Kingsford‏
Algorithms for Molecular Biology 9, 1-11, 2014‏
2512014
Global network alignment using multiscale spectral signatures‏
R Patro, C Kingsford‏
Bioinformatics 28 (23), 3105-3114, 2012‏
2512012
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data‏
A Srivastava, L Malik, T Smith, I Sudbery, R Patro‏
Genome biology 20, 1-16, 2019‏
2242019
A general-purpose counting filter: Making every bit count‏
P Pandey, MA Bender, R Johnson, R Patro‏
Proceedings of the 2017 ACM international conference on Management of Data …, 2017‏
2082017
Alignment and mapping methodology influence transcript abundance estimation‏
A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ...‏
Genome biology 21, 1-29, 2020‏
1852020
RNA sequencing data: hitchhiker's guide to expression analysis‏
K Van den Berge, KM Hembach, C Soneson, S Tiberi, L Clement, MI Love, ...‏
Annual Review of Biomedical Data Science 2 (1), 139-173, 2019‏
1682019
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes‏
A Srivastava, H Sarkar, N Gupta, R Patro‏
Bioinformatics 32 (12), i192-i200, 2016‏
1422016
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification‏
MI Love, C Soneson, R Patro‏
F1000Research 7, 952, 2018‏
1392018
Mantis: a fast, small, and exact large-scale sequence-search index‏
P Pandey, F Almodaresi, MA Bender, M Ferdman, R Johnson, R Patro‏
Cell systems 7 (2), 201-207. e4, 2018‏
1252018
Squeakr: an exact and approximate k-mer counting system‏
P Pandey, MA Bender, R Johnson, R Patro‏
Bioinformatics 34 (4), 568-575, 2018‏
1172018
Nonparametric expression analysis using inferential replicate counts‏
A Zhu, A Srivastava, JG Ibrahim, R Patro, MI Love‏
Nucleic Acids Research 47 (18), e105-e105, 2019‏
1092019
Maximum likelihood estimation of biological relatedness from low coverage sequencing data‏
M Lipatov, K Sanjeev, R Patro, KR Veeramah‏
BioRxiv, 023374, 2015‏
1012015
A space and time-efficient index for the compacted colored de Bruijn graph‏
F Almodaresi, H Sarkar, A Srivastava, R Patro‏
Bioinformatics 34 (13), i169-i177, 2018‏
972018
Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference‏
R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford‏
BioRxiv, 021592, 2015‏
812015
המערכת אינה יכולה לבצע את הפעולה כעת. נסה שוב מאוחר יותר.
מאמרים 1–20