| Sustainable data analysis with Snakemake F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... F1000Research 10, 2021 | 1148 | 2021 |
| Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ... Eurosurveillance 25 (32), 2001410, 2020 | 265 | 2020 |
| Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC K Jahn, D Dreifuss, I Topolsky, A Kull, P Ganesanandamoorthy, ... Nature microbiology 7 (8), 1151-1160, 2022 | 135 | 2022 |
| V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data S Posada-Céspedes, D Seifert, I Topolsky, KP Jablonski, KJ Metzner, ... Bioinformatics 37 (12), 1673-1680, 2021 | 81 | 2021 |
| Detection of SARS-CoV-2 variants in Switzerland by genomic analysis of wastewater samples K Jahn, D Dreifuss, I Topolsky, A Kull, P Ganesanandamoorthy, ... MedRxiv 9, 1055, 2021 | 80 | 2021 |
| Sustainable data analysis with Snakemake. F1000Res 10: 33 F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... | 62 | 2021 |
| Sustainable data analysis with Snakemake. F1000Res. 2021; 10: 33 F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... PubMed Abstract| Publisher Full Text, 0 | 46 | |
| Quantification of the spread of SARS-CoV-2 variant B. 1.1. 7 in Switzerland C Chen, SA Nadeau, I Topolsky, M Manceau, JS Huisman, KP Jablonski, ... Epidemics 37, 100480, 2021 | 40 | 2021 |
| Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data SA Nadeau, TG Vaughan, C Beckmann, I Topolsky, C Chen, E Hodcroft, ... Science Translational Medicine 15 (680), eabn7979, 2022 | 28 | 2022 |
| Within-patient genetic diversity of SARS-CoV-2 J Kuipers, AA Batavia, KP Jablonski, F Bayer, N Borgsmüller, A Dondi, ... BioRxiv, 2020.10. 12.335919, 2020 | 22 | 2020 |
| Chromosomal origin of replication coordinates logically distinct types of bacterial genetic regulation K Kosmidis, KP Jablonski, G Muskhelishvili, MT Hütt NPJ systems biology and applications 6 (1), 5, 2020 | 21 | 2020 |
| Sustainable data analysis with Snakemake. F1000Research. 2021; 10: 33 F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... | 20 | |
| Detection of SARS-CoV-2 variants in Switzerland by genomic analysis of wastewater samples. medRxiv 2021.01. 08.21249379 K Jahn, D Dreifuss, I Topolsky, A Kull, P Ganesanandamoorthy, ... | 18 | 2021 |
| Quantitative measures of within-host viral genetic diversity L Fuhrmann, KP Jablonski, N Beerenwinkel Current opinion in virology 49, 157-163, 2021 | 13 | 2021 |
| Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data S Nadeau, C Beckmann, I Topolsky, T Vaughan, E Hodcroft, T Schär, ... medRxiv, 2020.10. 14.20212621, 2020 | 13 | 2020 |
| Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study KP Jablonski, L Carron, J Mozziconacci, T Forné, MT Hütt, A Lesne Human Genomics 16 (1), 2, 2022 | 12 | 2022 |
| Identifying cancer pathway dysregulations using differential causal effects KP Jablonski, M Pirkl, D Ćevid, P Bühlmann, N Beerenwinkel Bioinformatics 38 (6), 1550-1559, 2022 | 8 | 2022 |
| Sustainable data analysis with Snakemake [version 2; peer review: 2 approved]. F1000Research. 2021; 10: 33 F Mölder, KP Jablonski, B Letcher | 8 | |
| Eukaryotic life without tQCUG: the role of Elongator-dependent tRNA modifications in Dictyostelium discoideum MA Schäck, KP Jablonski, S Gräf, R Klassen, R Schaffrath, S Kellner, ... Nucleic Acids Research 48 (14), 7899-7913, 2020 | 6 | 2020 |
| Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data SG Sutcliffe, SA Kraemer, I Ellmen, JJ Knapp, AK Overton, D Nash, ... Microbial Genomics 10 (5), 001249, 2024 | 5 | 2024 |
