Articoli con mandati relativi all'accesso pubblico - Jouni SirénUlteriori informazioni
Disponibili pubblicamente: 26
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
Mandati: US National Institutes of Health, Wellcome Trust
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
Mandati: US National Science Foundation, US National Institutes of Health, US …
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ...
Science 374 (6574), abg8871, 2021
Mandati: US National Institutes of Health, Carlsberg Foundation DK
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21 (1), 139-162, 2020
Mandati: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Genotyping structural variants in pangenome graphs using the vg toolkit
G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ...
Genome biology 21, 1-17, 2020
Mandati: US National Institutes of Health, European Molecular Biology Laboratory …
Wheeler graphs: A framework for BWT-based data structures
T Gagie, G Manzini, J Sirén
Theoretical computer science 698, 67-78, 2017
Mandati: Academy of Finland, Wellcome Trust, Governo Italiano
Indexing variation graphs
J Sirén
2017 Proceedings of the ninteenth workshop on algorithm engineering and …, 2017
Mandati: Wellcome Trust
Haplotype-aware graph indexes
J Sirén, E Garrison, AM Novak, B Paten, R Durbin
arXiv preprint arXiv:1805.03834, 2018
Mandati: US National Institutes of Health, Wellcome Trust
Fast in‐memory XPath search using compressed indexes
D Arroyuelo, F Claude, S Maneth, V Mäkinen, G Navarro, K Nguyễn, ...
Software: Practice and Experience 45 (3), 399-434, 2015
Mandati: Academy of Finland
Computational graph pangenomics: a tutorial on data structures and their applications
JA Baaijens, P Bonizzoni, C Boucher, G Della Vedova, Y Pirola, R Rizzi, ...
Natural Computing 21 (1), 81-108, 2022
Mandati: US National Institutes of Health, European Commission
Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
JA Sibbesen, JM Eizenga, AM Novak, J Sirén, X Chang, E Garrison, ...
Nature Methods 20 (2), 239-247, 2023
Mandati: US National Institutes of Health, Carlsberg Foundation DK
Gaps and complex structurally variant loci in phased genome assemblies
D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ...
Genome research 33 (4), 496-510, 2023
Mandati: US National Institutes of Health, Howard Hughes Medical Institute, European …
Burrows-Wheeler transform for terabases
J Sirén
2016 Data Compression Conference (DCC), 211-220, 2016
Mandati: Wellcome Trust
Document retrieval on repetitive string collections
T Gagie, A Hartikainen, K Karhu, J Kärkkäinen, G Navarro, SJ Puglisi, ...
Information Retrieval Journal 20, 253-291, 2017
Mandati: Academy of Finland, Wellcome Trust, European Commission
Relative suffix trees
A Farruggia, T Gagie, G Navarro, SJ Puglisi, J Sirén
The Computer Journal 61 (5), 773-788, 2018
Mandati: Academy of Finland, Wellcome Trust
Relative FM-indexes
D Belazzougui, T Gagie, S Gog, G Manzini, J Sirén
String Processing and Information Retrieval: 21st International Symposium …, 2014
Mandati: Australian Research Council
Distance indexing and seed clustering in sequence graphs
X Chang, J Eizenga, AM Novak, J Sirén, B Paten
Bioinformatics 36 (Supplement_1), i146-i153, 2020
Mandati: US National Institutes of Health
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
Mandati: US National Institutes of Health, Australian Research Council, Carlsberg …
Distribution-aware compressed full-text indexes
P Ferragina, J Sirén, R Venturini
Algorithmica 67 (4), 529-546, 2013
Mandati: European Commission, Governo Italiano
RLZAP: relative Lempel-Ziv with adaptive pointers
AJ Cox, A Farruggia, T Gagie, SJ Puglisi, J Sirén
International Symposium on String Processing and Information Retrieval, 1-14, 2016
Mandati: Academy of Finland, Wellcome Trust
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