In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics Y Yang, X Liu, C Shen, Y Lin, P Yang, L Qiao Nature communications 11 (1), 146, 2020 | 224 | 2020 |
Metaproteomics characterizes human gut microbiome function in colorectal cancer S Long, Y Yang, C Shen, Y Wang, A Deng, Q Qin, L Qiao NPJ biofilms and microbiomes 6 (1), 14, 2020 | 129 | 2020 |
Direct MALDI-TOF MS identification of bacterial mixtures Y Yang, Y Lin, L Qiao Analytical Chemistry 90 (17), 10400-10408, 2018 | 69 | 2018 |
Integrated microfluidic-SERS for exosome biomarker profiling and osteosarcoma diagnosis Z Han, X Peng, Y Yang, J Yi, D Zhao, Q Bao, S Long, SX Yu, XX Xu, B Liu, ... Biosensors and Bioelectronics 217, 114709, 2022 | 60 | 2022 |
SERS and MALDI-TOF MS based plasma exosome profiling for rapid detection of osteosarcoma Z Han, J Yi, Y Yang, D Li, C Peng, S Long, X Peng, Y Shen, B Liu, L Qiao Analyst 146 (21), 6496-6505, 2021 | 40 | 2021 |
GproDIA enables data-independent acquisition glycoproteomics with comprehensive statistical control Y Yang, G Yan, S Kong, M Wu, P Yang, W Cao, L Qiao Nature communications 12 (1), 6073, 2021 | 38 | 2021 |
Data-independent acquisition boosts quantitative metaproteomics for deep characterization of gut microbiota J Zhao, Y Yang, H Xu, J Zheng, C Shen, T Chen, T Wang, B Wang, J Yi, ... npj Biofilms and Microbiomes 9 (1), 4, 2023 | 37 | 2023 |
Matrix-assisted laser desorption ionization mass spectrometry profiling of plasma exosomes evaluates osteosarcoma metastasis Z Han, C Peng, J Yi, Y Wang, Q Liu, Y Yang, S Long, L Qiao, Y Shen Iscience 24 (8), 2021 | 28 | 2021 |
Nanoporous silica coupled MALDI-TOF MS detection of Bence-Jones proteins in human urine for diagnosis of multiple myeloma S Long, Q Qin, Y Wang, Y Yang, Y Wang, A Deng, L Qiao, B Liu Talanta 200, 288-292, 2019 | 26 | 2019 |
Bacterial whole cell typing by mass spectra pattern matching with bootstrapping assessment Y Yang, Y Lin, Z Chen, T Gong, P Yang, H Girault, B Liu, L Qiao Analytical chemistry 89 (22), 12556-12561, 2017 | 25 | 2017 |
MALDI-TOF characterization of protein expression mutation during morphological changes of bacteria under the impact of antibiotics D Zhang, Y Yang, Q Qin, J Xu, B Wang, J Chen, B Liu, W Zhang, L Qiao Analytical chemistry 91 (3), 2352-2359, 2019 | 22 | 2019 |
Fragment mass spectrum prediction facilitates site localization of phosphorylation Y Yang, P Horvatovich, L Qiao Journal of Proteome Research 20 (1), 634-644, 2020 | 19 | 2020 |
Data‐independent acquisition proteomics methods for analyzing post‐translational modifications Y Yang, L Qiao Proteomics 23 (7-8), 2200046, 2023 | 18 | 2023 |
Quantitative metaproteomics reveals composition and metabolism characteristics of microbial communities in Chinese liquor fermentation starters J Zhao, Y Yang, L Chen, J Zheng, X Lv, D Li, Z Fang, C Shen, ... Frontiers in Microbiology 13, 1098268, 2023 | 16 | 2023 |
Deep learning approaches for data-independent acquisition proteomics Y Yang, L Lin, L Qiao Expert Review of Proteomics 18 (12), 1031-1043, 2021 | 15 | 2021 |
Evaluation of prostate cancer based on MALDI-TOF MS fingerprinting of nanoparticle-treated serum proteins/peptides J Sun, G Yu, Y Yang, L Qiao, B Xu, C Ding, Y Liu, S Yu Talanta 220, 121331, 2020 | 14 | 2020 |
DeepFLR facilitates false localization rate control in phosphoproteomics Y Zong, Y Wang, Y Yang, D Zhao, X Wang, C Shen, L Qiao Nature Communications 14 (1), 2269, 2023 | 10 | 2023 |
Metaproteomics profiling of the microbial communities in fermentation starters (Daqu) during multi-round production of Chinese liquor J Zhao, Y Yang, M Teng, J Zheng, B Wang, V Mallawaarachchi, Y Lin, ... Frontiers in Nutrition 10, 1139836, 2023 | 8 | 2023 |
Direct MALDI-TOF profiling of gingival crevicular fluid sediments for periodontitis diagnosis J Yi, Y Shen, Y Yang, C Shen, B Liu, L Qiao, Y Wang Talanta 225, 121956, 2021 | 8 | 2021 |
Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics E Wu, V Mallawaarachchi, J Zhao, Y Yang, H Liu, X Wang, C Shen, Y Lin, ... Microbiome 12 (1), 58, 2024 | 7 | 2024 |