Articoli con mandati relativi all'accesso pubblico - Deepak KoiralaUlteriori informazioni
Non disponibili pubblicamente: 2
Click chemistry assisted single-molecule fingerprinting reveals a 3D biomolecular folding funnel
Z Yu, D Koirala, Y Cui, LF Easterling, Y Zhao, H Mao
Journal of the American Chemical Society 134 (30), 12338-12341, 2012
Mandati: US National Institutes of Health
Structural basis for substrate binding and catalysis by a self-alkylating ribozyme
D Krochmal, Y Shao, NS Li, S DasGupta, SA Shelke, D Koirala, ...
Nature Chemical Biology 18 (4), 376-384, 2022
Mandati: US Department of Energy, US National Institutes of Health
Disponibili pubblicamente: 16
A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands
D Koirala, S Dhakal, B Ashbridge, Y Sannohe, R Rodriguez, H Sugiyama, ...
Nature chemistry 3 (10), 782-787, 2011
Mandati: US National Institutes of Health, Cancer Research UK
G-quadruplex and i-motif are mutually exclusive in ILPR double-stranded DNA
S Dhakal, Z Yu, R Konik, Y Cui, D Koirala, H Mao
Biophysical journal 102 (11), 2575-2584, 2012
Mandati: US National Institutes of Health
Coexistence of an ILPR i-motif and a partially folded structure with comparable mechanical stability revealed at the single-molecule level
S Dhakal, JD Schonhoft, D Koirala, Z Yu, S Basu, H Mao
Journal of the American Chemical Society 132 (26), 8991-8997, 2010
Mandati: US National Institutes of Health
Divalent cations and molecular crowding buffers stabilize G-triplex at physiologically relevant temperatures
HX Jiang, Y Cui, T Zhao, HW Fu, D Koirala, JA Punnoose, DM Kong, ...
Scientific reports 5 (1), 9255, 2015
Mandati: National Natural Science Foundation of China
The SARS-CoV-2 programmed− 1 ribosomal frameshifting element crystal structure solved to 2.09 Å using chaperone-assisted RNA crystallography
C Roman, A Lewicka, D Koirala, NS Li, JA Piccirilli
ACS Chemical Biology 16 (8), 1469-1481, 2021
Mandati: US National Institutes of Health, Howard Hughes Medical Institute
Molecular population dynamics of DNA structures in a bcl-2 promoter sequence is regulated by small molecules and the transcription factor hnRNP LL
Y Cui, D Koirala, HJ Kang, S Dhakal, P Yangyuoru, LH Hurley, H Mao
Nucleic acids research 42 (9), 5755-5764, 2014
Mandati: US National Institutes of Health
Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif
SA Shelke, Y Shao, A Laski, D Koirala, BP Weissman, JR Fuller, X Tan, ...
Nature Communications 9 (1), 4542, 2018
Mandati: US Department of Energy, US Department of Defense, US National Institutes of …
Mechanical properties of DNA origami nanoassemblies are determined by Holliday junction mechanophores
P Shrestha, T Emura, D Koirala, Y Cui, K Hidaka, WJ Maximuck, M Endo, ...
Nucleic acids research 44 (14), 6574-6582, 2016
Mandati: US National Science Foundation
Mechanochemical properties of individual human telomeric RNA (TERRA) G-quadruplexes
PM Yangyuoru, AYQ Zhang, Z Shi, D Koirala, S Balasubramanian, H Mao
ChemBioChem 14 (15), 1931-1935, 2013
Mandati: Cancer Research UK
Affinity maturation of a portable Fab–RNA module for chaperone-assisted RNA crystallography
D Koirala, SA Shelke, M Dupont, S Ruiz, S DasGupta, LJ Bailey, ...
Nucleic Acids Research 46 (5), 2624-2635, 2018
Mandati: US Department of Energy, US Department of Defense, US National Institutes of …
A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites
D Koirala, Y Shao, Y Koldobskaya, JR Fuller, AM Watkins, SA Shelke, ...
Nature Communications 10 (1), 3629, 2019
Mandati: US Department of Energy, US National Institutes of Health
Synthetic antibody binding to a preorganized RNA domain of hepatitis C virus internal ribosome entry site inhibits translation
D Koirala, A Lewicka, Y Koldobskaya, H Huang, JA Piccirilli
ACS chemical biology 15 (1), 205-216, 2019
Mandati: US Department of Energy, US National Institutes of Health
Crystal structure of a highly conserved enteroviral 5′ cloverleaf RNA replication element
NK Das, NM Hollmann, J Vogt, SE Sevdalis, HA Banna, M Ojha, D Koirala
Nature communications 14 (1), 1955, 2023
Mandati: US National Science Foundation, US Department of Energy, US National …
Structural basis for fluorescence activation by Pepper RNA
HC Rees, W Gogacz, NS Li, D Koirala, JA Piccirilli
ACS chemical biology 17 (7), 1866-1875, 2022
Mandati: US National Institutes of Health
Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands
M Swain, AA Ageeli, WK Kasprzak, M Li, JT Miller, J Sztuba-Solinska, ...
Nucleic Acids Research 49 (22), 13179-13193, 2021
Mandati: US National Institutes of Health
Advances in chaperone-assisted RNA crystallography using synthetic antibodies
H Al Banna, NK Das, M Ojha, D Koirala
BBA advances, 100101, 2023
Mandati: US National Science Foundation, US National Institutes of Health
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