Articoli con mandati relativi all'accesso pubblico - Jonathan CooperUlteriori informazioni
Disponibili pubblicamente: 23
Chaste: a test-driven approach to software development for biological modelling
J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, ...
Computer Physics Communications 180 (12), 2452-2471, 2009
Mandati: US National Institutes of Health
An integrative computational model for intestinal tissue renewal
IMM Van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, ...
Cell proliferation 42 (5), 617-636, 2009
Mandati: US National Institutes of Health, Cancer Research UK
Minimum Information About a Simulation Experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS Computational Biology 7 (4), e1001122, 2011
Mandati: US National Institutes of Health, German Research Foundation
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 369, 2014
Mandati: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative
M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ...
Frontiers in Bioengineering and Biotechnology 3, 2015
Mandati: US National Institutes of Health, Australian Research Council, UK …
Chaste: Cancer, Heart and Soft Tissue Environment
F Cooper, R Baker, M Bernabeu, R Bordas, L Bowler, A Bueno-Orovio, ...
Journal of Open Source Software 5 (47), 1848, 2020
Mandati: UK Biotechnology and Biological Sciences Research Council, British Heart …
Ten simple rules for a successful cross-disciplinary collaboration
B Knapp, R Bardenet, MO Bernabeu, R Bordas, M Bruna, B Calderhead, ...
PLoS computational biology 11 (4), e1004214, 2015
Mandati: UK Engineering and Physical Sciences Research Council
The Cardiac Electrophysiology Web Lab
J Cooper, M Scharm, GR Mirams
Biophysical Journal 110 (2), 292-300, 2016
Mandati: UK Engineering and Physical Sciences Research Council, UK Medical Research …
A call for virtual experiments: accelerating the scientific process
J Cooper, JO Vik, D Waltemath
Progress in biophysics and molecular biology 117 (1), 99-106, 2015
Mandati: UK Engineering and Physical Sciences Research Council
Ten simple rules for effective computational research
JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ...
PLoS Comput Biol 10 (3), e1003506, 2014
Mandati: UK Engineering and Physical Sciences Research Council, Wellcome Trust
Hodgkin–Huxley revisited: reparametrization and identifiability analysis of the classic action potential model with approximate Bayesian methods
AC Daly, DJ Gavaghan, C Holmes, J Cooper
Royal Society Open Science 2 (12), 150499, 2015
Mandati: UK Engineering and Physical Sciences Research Council
Cellular cardiac electrophysiology modeling with Chaste and CellML
J Cooper, RJ Spiteri, GR Mirams
Frontiers in Physiology 5, 2014
Mandati: UK Engineering and Physical Sciences Research Council, National Centre for …
Use of Bayesian inference for parameter recovery in DC and AC Voltammetry
DJ Gavaghan, J Cooper, AC Daly, C Gill, K Gillow, M Robinson, ...
ChemElectroChem 5 (6), 917-935, 2018
Mandati: Australian Research Council, UK Engineering and Physical Sciences Research …
CellML 2.0
M Clerx, MT Cooling, J Cooper, A Garny, K Moyle, DP Nickerson, ...
Journal of Integrative Bioinformatics 17 (2-3), 2020
Mandati: UK Biotechnology and Biological Sciences Research Council
An integrated approach to quantitative modelling in angiogenesis research
AJ Connor, RP Nowak, E Lorenzon, M Thomas, F Herting, S Hoert, ...
Journal of The Royal Society Interface 12 (110), 20150546, 2015
Mandati: UK Engineering and Physical Sciences Research Council
Inference-based assessment of parameter identifiability in nonlinear biological models
AC Daly, D Gavaghan, J Cooper, S Tavener
Journal of The Royal Society Interface 15 (144), 20180318, 2018
Mandati: US National Science Foundation, UK Engineering and Physical Sciences …
Reproducible model development in the cardiac electrophysiology Web Lab
AC Daly, M Clerx, KA Beattie, J Cooper, DJ Gavaghan, GR Mirams
Progress in biophysics and molecular biology 139, 3-14, 2018
Mandati: UK Biotechnology and Biological Sciences Research Council, UK Engineering …
Where next for the reproducibility agenda in computational biology?
J Lewis, CE Breeze, J Charlesworth, OJ Maclaren, J Cooper
BMC Systems Biology 10 (1), 52, 2016
Mandati: UK Biotechnology and Biological Sciences Research Council, UK Engineering …
Comparing two sequential Monte Carlo samplers for exact and approximate Bayesian inference on biological models
AC Daly, J Cooper, DJ Gavaghan, C Holmes
Journal of The Royal Society Interface 14 (134), 20170340, 2017
Mandati: UK Engineering and Physical Sciences Research Council, UK Medical Research …
Models of the cardiac L‐type calcium current: A quantitative review
A Agrawal, K Wang, L Polonchuk, J Cooper, M Hendrix, DJ Gavaghan, ...
WIREs Mechanisms of Disease 15 (1), e1581, 2023
Mandati: UK Biotechnology and Biological Sciences Research Council, UK Engineering …
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