| Cytoscape automation: empowering workflow-based network analysis D Otasek, JH Morris, J Bouças, AR Pico, B Demchak Genome biology 20, 1-15, 2019 | 1223 | 2019 |
| Biological network exploration with Cytoscape 3 G Su, JH Morris, B Demchak, GD Bader Current protocols in bioinformatics 47 (1), 8.13. 1-8.13. 24, 2014 | 992 | 2014 |
| Using deep learning to model the hierarchical structure and function of a cell J Ma, MK Yu, S Fong, K Ono, E Sage, B Demchak, R Sharan, T Ideker Nature methods 15 (4), 290-298, 2018 | 404 | 2018 |
| NDEx, the network data exchange D Pratt, J Chen, D Welker, R Rivas, R Pillich, V Rynkov, K Ono, C Miello, ... Cell systems 1 (4), 302-305, 2015 | 259 | 2015 |
| Cytoscape: the network visualization tool for GenomeSpace workflows B Demchak, T Hull, M Reich, T Liefeld, M Smoot, T Ideker, JP Mesirov F1000Research 3, 2014 | 191 | 2014 |
| RCy3: Network biology using Cytoscape from within R JA Gustavsen, S Pai, R Isserlin, B Demchak, AR Pico F1000Research 8, 2019 | 181 | 2019 |
| Validity of PALMS GPS scoring of active and passive travel compared to SenseCam JA Carlson, MM Jankowska, K Meseck, S Godbole, L Natarajan, F Raab, ... Medicine and science in sports and exercise 47 (3), 662, 2015 | 133 | 2015 |
| CyREST: turbocharging Cytoscape access for external tools via a RESTful API K Ono, T Muetze, G Kolishovski, P Shannon, B Demchak F1000Research 4, 2015 | 94 | 2015 |
| Network propagation in the cytoscape cyberinfrastructure DE Carlin, B Demchak, D Pratt, E Sage, T Ideker PLoS computational biology 13 (10), e1005598, 2017 | 93 | 2017 |
| NDEx 2.0: a clearinghouse for research on cancer pathways D Pratt, J Chen, R Pillich, V Rynkov, A Gary, B Demchak, T Ideker Cancer research 77 (21), e58-e61, 2017 | 68 | 2017 |
| Rich Services: The integration piece of the SOA puzzle M Arrott, B Demchak, V Ermagan, C Farcas, E Farcas, IH Kriiger, ... IEEE International Conference on Web Services (ICWS 2007), 176-183, 2007 | 52 | 2007 |
| Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace K Qu, S Garamszegi, F Wu, H Thorvaldsdottir, T Liefeld, M Ocana, ... Nature methods 13 (3), 245-247, 2016 | 49 | 2016 |
| Cytoscape tools for the web age: D3. js and Cytoscape. js exporters K Ono, B Demchak, T Ideker F1000Research 3, 2014 | 46 | 2014 |
| The anatomy of successful computational biology software S Altschul, B Demchak, R Durbin, R Gentleman, M Krzywinski, H Li, ... Nature biotechnology 31 (10), 894-897, 2013 | 39 | 2013 |
| Active interaction mapping reveals the hierarchical organization of autophagy MH Kramer, JC Farre, K Mitra, MK Yu, K Ono, B Demchak, K Licon, ... Molecular cell 65 (4), 761-774. e5, 2017 | 36 | 2017 |
| cyNeo4j: connecting Neo4j and Cytoscape G Summer, T Kelder, K Ono, M Radonjic, S Heymans, B Demchak Bioinformatics 31 (23), 3868-3869, 2015 | 32 | 2015 |
| PALMS: a modern coevolution of community and computing using policy driven development B Demchak, J Kerr, F Raab, K Patrick, IH Kruger 2012 45th Hawaii International Conference on System Sciences, 2735-2744, 2012 | 32 | 2012 |
| Validating GPS data with the PALMS system to detect different active transportation modes J Kerr, G Norman, S Godbole, F Raab, B Demchak, K Patrick Medicine and Science in Sports and Exercise 44, 647-647, 2012 | 28 | 2012 |
| Middleware for reliable mobile medical workflow support in disaster settings SW Brown, WG Griswold, B Demchak, BALA Lenert AMIA Annual Symposium Proceedings 2006, 309, 2006 | 28 | 2006 |
| The Cytoscape Automation app article collection B Demchak, D Otasek, AR Pico, GD Bader, K Ono, B Settle, E Sage, ... | 24 | 2018 |
John H MorrisUCSFEmail verificata su cgl.ucsf.edu