| Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms K Okazaki, S Takada Proceedings of the National Academy of Sciences 105 (32), 11182-11187, 2008 | 381 | 2008 |
| Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations K Okazaki, N Koga, S Takada, JN Onuchic, PG Wolynes Proceedings of the National Academy of Sciences 103 (32), 11844-11849, 2006 | 352 | 2006 |
| CafeMol: a coarse-grained biomolecular simulator for simulating proteins at work H Kenzaki, N Koga, N Hori, R Kanada, W Li, K Okazaki, XQ Yao, ... Journal of Chemical Theory and Computation 7 (6), 1979-1989, 2011 | 230 | 2011 |
| Phosphate release coupled to rotary motion of F1-ATPase K Okazaki, G Hummer Proceedings of the National Academy of Sciences 110 (41), 16468-16473, 2013 | 103 | 2013 |
| Protein folds vs. protein folding: Differing questions, different challenges SJ Chen, M Hassan, RL Jernigan, K Jia, D Kihara, A Kloczkowski, ... Proceedings of the National Academy of Sciences 120 (1), e2214423119, 2023 | 78 | 2023 |
| Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin A Nakamura, K Okazaki, T Furuta, M Sakurai, R Iino Nature Communications 9 (1), 3814, 2018 | 70 | 2018 |
| Transition path sampling of rare events by shooting from the top H Jung, K Okazaki, G Hummer The Journal of chemical physics 147 (15), 2017 | 58 | 2017 |
| Elasticity, friction, and pathway of γ-subunit rotation in FoF1-ATP synthase K Okazaki, G Hummer Proceedings of the National Academy of Sciences 112 (34), 10720-10725, 2015 | 57 | 2015 |
| Temperature-enhanced association of proteins due to electrostatic interaction: A coarse-grained simulation of actin–myosin binding K Okazaki, T Sato, M Takano Journal of the American Chemical Society 134 (21), 8918-8925, 2012 | 46 | 2012 |
| Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting K Okazaki, D Wöhlert, J Warnau, H Jung, Ö Yildiz, W Kühlbrandt, ... Nature communications 10 (1), 1742, 2019 | 43 | 2019 |
| Structural comparison of F1-ATPase: interplay among enzyme structures, catalysis, and rotations K Okazaki, S Takada Structure 19 (4), 588-598, 2011 | 43 | 2011 |
| F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements M Sugawa, K Okazaki, M Kobayashi, T Matsui, G Hummer, T Masaike, ... Proceedings of the National Academy of Sciences 113 (21), E2916-E2924, 2016 | 41 | 2016 |
| Optimizing Gō-MARTINI coarse-grained model for F-BAR protein on lipid membrane MI Mahmood, AB Poma, K Okazaki Frontiers in molecular biosciences 8, 619381, 2021 | 38 | 2021 |
| Curvature induction and sensing of the F-BAR protein Pacsin1 on lipid membranes via molecular dynamics simulations MI Mahmood, H Noguchi, K Okazaki Scientific Reports 9 (1), 14557, 2019 | 38 | 2019 |
| Paddling mechanism for the substrate translocation by AAA+ motor revealed by multiscale molecular simulations N Koga, T Kameda, K Okazaki, S Takada Proceedings of the National Academy of Sciences 106 (43), 18237-18242, 2009 | 36 | 2009 |
| Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide Y Mori, K Okazaki, T Mori, K Kim, N Matubayasi The Journal of Chemical Physics 153 (5), 2020 | 32 | 2020 |
| Explaining reaction coordinates of alanine dipeptide isomerization obtained from deep neural networks using Explainable Artificial Intelligence (XAI) T Kikutsuji, Y Mori, K Okazaki, T Mori, K Kim, N Matubayasi The journal of chemical physics 156 (15), 2022 | 31 | 2022 |
| Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase R Kobayashi, H Ueno, K Okazaki, H Noji Nature Communications 14 (1), 1682, 2023 | 18 | 2023 |
| Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation J Warnau, D Wöhlert, K Okazaki, O Yildiz, AP Gamiz-Hernandez, ... The Journal of Physical Chemistry B 124 (2), 336-344, 2019 | 10 | 2019 |
| Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota T Jaunet-Lahary, T Shimamura, M Hayashi, N Nomura, K Hirasawa, ... Nature communications 14 (1), 1730, 2023 | 9 | 2023 |
Gerhard HummerMax Planck Institute of BiophysicsEmail verificata su biophys.mpg.de