Subspecific origin and haplotype diversity in the laboratory mouse H Yang, JR Wang, JP Didion, RJ Buus, TA Bell, CE Welsh, F Bonhomme, ... Nature genetics 43 (7), 648-655, 2011 | 499 | 2011 |
The genome architecture of the Collaborative Cross mouse genetic reference population Collaborative Cross Consortium Genetics 190 (2), 389-401, 2012 | 472 | 2012 |
Genetic analysis of complex traits in the emerging Collaborative Cross DL Aylor, W Valdar, W Foulds-Mathes, RJ Buus, RA Verdugo, RS Baric, ... Genome research 21 (8), 1213-1222, 2011 | 379 | 2011 |
Coexistent ARID1A–PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling RL Chandler, JS Damrauer, JR Raab, JC Schisler, MD Wilkerson, ... Nature communications 6 (1), 6118, 2015 | 330 | 2015 |
Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring V Lange, JA Malmström, J Didion, NL King, BP Johansson, J Schäfer, ... Molecular & Cellular Proteomics 7 (8), 1489-1500, 2008 | 237 | 2008 |
Atropos: specific, sensitive, and speedy trimming of sequencing reads JP Didion, M Martin, FS Collins PeerJ 5, e3720, 2017 | 225 | 2017 |
Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance JJ Crowley, V Zhabotynsky, W Sun, S Huang, IK Pakatci, Y Kim, JR Wang, ... Nature genetics 47 (4), 353-360, 2015 | 225 | 2015 |
The mouse universal genotyping array: from substrains to subspecies AP Morgan, CP Fu, CY Kao, CE Welsh, JP Didion, L Yadgary, L Hyacinth, ... G3: Genes, Genomes, Genetics 6 (2), 263-279, 2016 | 220 | 2016 |
Genetic regulatory signatures underlying islet gene expression and type 2 diabetes A Varshney, LJ Scott, RP Welch, MR Erdos, PS Chines, N Narisu, ... Proceedings of the National Academy of Sciences 114 (9), 2301-2306, 2017 | 209 | 2017 |
The genetic regulatory signature of type 2 diabetes in human skeletal muscle LJ Scott, MR Erdos, JR Huyghe, RP Welch, AT Beck, BN Wolford, ... Nature communications 7 (1), 11764, 2016 | 136 | 2016 |
Integrative analysis of gene expression, DNA methylation, physiological traits, and genetic variation in human skeletal muscle DL Taylor, AU Jackson, N Narisu, G Hemani, MR Erdos, PS Chines, ... Proceedings of the National Academy of Sciences 116 (22), 10883-10888, 2019 | 131 | 2019 |
Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures V Rai, DX Quang, MR Erdos, DA Cusanovich, RM Daza, N Narisu, LS Zou, ... Molecular metabolism 32, 109-121, 2020 | 121 | 2020 |
Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias JP Didion, H Yang, K Sheppard, CP Fu, L McMillan, FPM de Villena, ... BMC genomics 13, 1-18, 2012 | 84 | 2012 |
A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2 JP Didion, AP Morgan, AMF Clayshulte, RC Mcmullan, L Yadgary, ... PLoS Genetics 11 (2), e1004850, 2015 | 77 | 2015 |
Deconstructing Mus gemischus: advances in understanding ancestry, structure, and variation in the genome of the laboratory mouse JP Didion, FPM de Villena Mammalian Genome 24, 1-20, 2013 | 75 | 2013 |
SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy JP Didion, RJ Buus, Z Naghashfar, DW Threadgill, HC Morse, ... BMC genomics 15, 1-12, 2014 | 59 | 2014 |
R2d2 Drives Selfish Sweeps in the House Mouse JP Didion, AP Morgan, L Yadgary, TA Bell, RC McMullan, ... Molecular biology and evolution 33 (6), 1381-1395, 2016 | 53 | 2016 |
Genetic architecture of skewed X inactivation in the laboratory mouse JD Calaway, AB Lenarcic, JP Didion, JR Wang, JB Searle, L McMillan, ... PLoS Genetics 9 (10), e1003853, 2013 | 52 | 2013 |
BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues LS Zou, MR Erdos, DL Taylor, PS Chines, A Varshney, ... BMC genomics 19, 1-15, 2018 | 44 | 2018 |
Genetic effects on liver chromatin accessibility identify disease regulatory variants KW Currin, MR Erdos, N Narisu, V Rai, S Vadlamudi, HJ Perrin, JR Idol, ... The American Journal of Human Genetics 108 (7), 1169-1189, 2021 | 33 | 2021 |