| Bioconductor: open software development for computational biology and bioinformatics RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ... Genome biology 5, 1-16, 2004 | 14376 | 2004 |
| Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed Nucleic acids research 30 (4), e15-e15, 2002 | 4460 | 2002 |
| Comparison of discrimination methods for the classification of tumors using gene expression data S Dudoit, J Fridlyand, TP Speed Journal of the American statistical association 97 (457), 77-87, 2002 | 3604 | 2002 |
| Bioinformatics and computational biology solutions using R and Bioconductor R Gentleman, V Carey, W Huber, R Irizarry, S Dudoit Springer Science & Business Media, 2005 | 3601 | 2005 |
| Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments S Dudoit, YH Yang, MJ Callow, TP Speed Statistica sinica, 111-139, 2002 | 2205 | 2002 |
| Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments JH Bullard, E Purdom, KD Hansen, S Dudoit BMC bioinformatics 11, 1-13, 2010 | 2149 | 2010 |
| Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics K Street, D Risso, RB Fletcher, D Das, J Ngai, N Yosef, E Purdom, ... BMC genomics 19, 1-16, 2018 | 2142 | 2018 |
| Normalization of RNA-seq data using factor analysis of control genes or samples D Risso, J Ngai, TP Speed, S Dudoit Nature biotechnology 32 (9), 896-902, 2014 | 1906 | 2014 |
| The developmental transcriptome of Drosophila melanogaster BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ... Nature 471 (7339), 473-479, 2011 | 1712 | 2011 |
| Multiple hypothesis testing in microarray experiments S Dudoit, JP Shaffer, JC Boldrick Statistical Science 18 (1), 71-103, 2003 | 1465 | 2003 |
| Diversity, topographic differentiation, and positional memory in human fibroblasts HY Chang, JT Chi, S Dudoit, C Bondre, M Van De Rijn, D Botstein, ... Proceedings of the National Academy of Sciences 99 (20), 12877-12882, 2002 | 1427 | 2002 |
| Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ... Science advances 6 (31), eabc5801, 2020 | 1236 | 2020 |
| GC-content normalization for RNA-Seq data D Risso, K Schwartz, G Sherlock, S Dudoit BMC bioinformatics 12, 1-17, 2011 | 1115 | 2011 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1102 | 2010 |
| Gene expression patterns in human liver cancers X Chen, ST Cheung, S So, ST Fan, C Barry, J Higgins, KM Lai, J Ji, ... Molecular biology of the cell 13 (6), 1929-1939, 2002 | 1050 | 2002 |
| A prediction-based resampling method for estimating the number of clusters in a dataset S Dudoit, J Fridlyand Genome biology 3, 1-21, 2002 | 1022 | 2002 |
| Survival ensembles T Hothorn, P Bühlmann, S Dudoit, A Molinaro, MJ Van Der Laan Biostatistics 7 (3), 355-373, 2006 | 991 | 2006 |
| Multiple testing procedures with applications to genomics S Dudoit, MJ Van Der Laan, MJ van der Laan Springer, 2008 | 943* | 2008 |
| Biases in Illumina transcriptome sequencing caused by random hexamer priming KD Hansen, SE Brenner, S Dudoit Nucleic acids research 38 (12), e131-e131, 2010 | 905 | 2010 |
| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 791 | 2013 |
