| Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014 | 1990 | 2014 |
| ASTRAL: genome-scale coalescent-based species tree estimation S Mirarab, R Reaz, MS Bayzid, T Zimmermann, MS Swenson, T Warnow Bioinformatics 30 (17), i541-i548, 2014 | 1228 | 2014 |
| Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting S Mirarab, MS Bayzid, T Warnow Systematic Biology 65 (3), 366-380, 2016 | 291 | 2016 |
| Statistical binning enables an accurate coalescent-based estimation of the avian tree S Mirarab, MS Bayzid, B Boussau, T Warnow Science 346 (6215), 1250463, 2014 | 264 | 2014 |
| Naive binning improves phylogenomic analyses MS Bayzid, T Warnow Bioinformatics 29 (18), 2277-2284, 2013 | 165 | 2013 |
| Accurate phylogenetic tree reconstruction from quartets: A heuristic approach R Reaz, MS Bayzid, MS Rahman PloS one 9 (8), e104008, 2014 | 139 | 2014 |
| Weighted Statistical Binning: enabling statistically consistent genome-scale phylogenetic analyses BBTW Md. Shamsuzzoha Bayzid, Siavash Mirarab PLoS ONE 10 (6), 2015 | 123 | 2015 |
| SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction MR Uddin, S Mahbub, MS Rahman, MS Bayzid Bioinformatics 36 (17), 4599-4608, 2020 | 69 | 2020 |
| EGRET: edge aggregated graph attention networks and transfer learning improve protein–protein interaction site prediction S Mahbub, MS Bayzid Briefings in Bioinformatics 23 (2), bbab578, 2022 | 50 | 2022 |
| Estimating optimal species trees from incomplete gene trees under deep coalescence MS Bayzid, T Warnow Journal of Computational Biology 19 (6), 591-605, 2012 | 47 | 2012 |
| Inferring optimal species trees under gene duplication and loss MS Bayzid, S Mirarab, T Warnow Biocomputing 2013, 250-261, 2013 | 43 | 2013 |
| Disk covering methods improve phylogenomic analyses MS Bayzid, T Hunt, T Warnow BMC genomics 15, 1-11, 2014 | 41 | 2014 |
| Discovering pairwise compatibility graphs MN Yanhaona, MS Bayzid, MS Rahman Discrete Mathematics, Algorithms and Applications 2 (04), 607-623, 2010 | 41 | 2010 |
| Machine learning based imputation techniques for estimating phylogenetic trees from incomplete distance matrices A Bhattacharjee, MS Bayzid BMC genomics 21 (1), 497, 2020 | 35 | 2020 |
| STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency M Islam, K Sarker, T Das, R Reaz, MS Bayzid BMC genomics 21, 1-13, 2020 | 28 | 2020 |
| Gene tree parsimony for incomplete gene trees: addressing true biological loss MS Bayzid, T Warnow Algorithms for Molecular Biology 13, 1-12, 2018 | 28 | 2018 |
| wQFM: highly accurate genome-scale species tree estimation from weighted quartets M Mahbub, Z Wahab, R Reaz, MS Rahman, MS Bayzid Bioinformatics 37 (21), 3734-3743, 2021 | 25 | 2021 |
| Biological computation and computational biology: survey, challenges, and discussion Z Chelly Dagdia, P Avdeyev, MS Bayzid Artificial Intelligence Review 54 (6), 4169-4235, 2021 | 25 | 2021 |
| Response to comment on “Statistical binning enables an accurate coalescent-based estimation of the avian tree” S Mirarab, MS Bayzid, B Boussau, T Warnow Science 350 (6257), 171-171, 2015 | 24 | 2015 |
| Hmec: A heuristic algorithm for individual haplotyping with minimum error correction MS Bayzid, MM Alam, A Mueen, MS Rahman International Scholarly Research Notices 2013 (1), 291741, 2013 | 11 | 2013 |
Tandy WarnowGrainger Distinguished Chair in Engineering, UIUCEmail verificata su illinois.edu