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Efficient modeling, simulation and coarse-graining of biological complexity with NFsim MW Sneddon, JR Faeder, T Emonet Nature methods 8 (2), 177-183, 2011 | 380 | 2011 |
Definition of germinal-center B cell migration in vivo reveals predominant intrazonal circulation patterns AE Hauser, T Junt, TR Mempel, MW Sneddon, SH Kleinstein, ... Immunity 26 (5), 655-667, 2007 | 379 | 2007 |
Single‐cell quantification of IL‐2 response by effector and regulatory T cells reveals critical plasticity in immune response O Feinerman, G Jentsch, KE Tkach, JW Coward, MM Hathorn, ... Molecular systems biology 6 (1), 437, 2010 | 248 | 2010 |
Regulated tissue fluidity steers zebrafish body elongation AK Lawton, A Nandi, MJ Stulberg, N Dray, MW Sneddon, W Pontius, ... Development 140 (3), 573-582, 2013 | 150 | 2013 |
The DOE systems biology knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... BioRxiv, 096354, 2016 | 80 | 2016 |
Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria MW Sneddon, W Pontius, T Emonet Proceedings of the National Academy of Sciences 109 (3), 805-810, 2012 | 70 | 2012 |
Metagenome-assembled genome extraction and analysis from microbiomes using KBase D Chivian, SP Jungbluth, PS Dehal, EM Wood-Charlson, RS Canon, ... Nature Protocols 18 (1), 208-238, 2023 | 57 | 2023 |
Adaptation dynamics in densely clustered chemoreceptors W Pontius, MW Sneddon, T Emonet PLoS computational biology 9 (9), e1003230, 2013 | 23 | 2013 |
Modeling cellular signaling: taking space into the computation MW Sneddon, T Emonet nature methods 9 (3), 239-242, 2012 | 10 | 2012 |
NFsim: Managing Complexity in Stochastic Simulations of Reaction Networks MW Sneddon, W Pontius, J Faeder, T Emonet Phys. Rev, 4-4, 2008 | 6 | 2008 |
Genome extraction from shotgun metagenome sequence data D Chivian, SP Jungbluth, PS Dehal, RS Canon, BH Allen, MM Clark, T Gu, ... US Department of Energy Systems Biology Knowledgebase, 2021 | 3 | 2021 |
KBase: an integrated knowledgebase for predictive biology and environmental research A Palumbo, J Baumohl, A Best, J Bischof, B Bowen, T Brettin, T Brown, ... Proceedings of the International Conference on Bioinformatics …, 2014 | 3 | 2014 |
Thermal robustness: lessons from bacterial chemotaxis YS Dufour, MW Sneddon, T Emonet Current Biology 21 (12), R465-R468, 2011 | 3 | 2011 |
Overcoming complexity in systems biology modeling and simulation MW Sneddon Yale University, 2012 | 2 | 2012 |
Metagenomic library and natural product discovery platform O Liu, E Akiva, TH Eyles, U Galm, S Ganesh, SLB Hendrix, WW Hwang, ... US Patent 11,189,362, 2021 | 1 | 2021 |
Moab Desert Crust-Sample 4E D Chivian, SP Jungbluth, PS Dehal, E Wood-Charlson, RS Canon, ... US Department of Energy Systems Biology Knowledgebase, 2021 | 1 | 2021 |
Metagenomic library and natural product discovery platform O Liu, E Akiva, TH Eyles, U Galm, S Ganesh, SLB Hendrix, WW Hwang, ... US Patent App. 17/951,779, 2023 | | 2023 |
Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase D Chivian, SP Jungbluth, PS Dehal, EM Wood-Charlson, RS Canon, ... Nature protocols 18 (2), 658, 2023 | | 2023 |
Metagenomic library and natural product discovery platform O Liu, E Akiva, TH Eyles, U Galm, S Ganesh, SLB Hendrix, WW Hwang, ... US Patent 11,495,326, 2022 | | 2022 |