| MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data G Finak, A McDavid, M Yajima, J Deng, V Gersuk, AK Shalek, CK Slichter, ... Genome biology 16, 1-13, 2015 | 2624 | 2015 |
| Stromal gene expression predicts clinical outcome in breast cancer G Finak, N Bertos, F Pepin, S Sadekova, M Souleimanova, H Zhao, ... Nature medicine 14 (5), 518-527, 2008 | 1921 | 2008 |
| Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, FlowCAP Consortium, Dream Consortium, ... Nature methods 10 (3), 228-238, 2013 | 683 | 2013 |
| Safety and immunogenicity of a mRNA rabies vaccine in healthy adults: an open-label, non-randomised, prospective, first-in-human phase 1 clinical trial M Alberer, U Gnad-Vogt, HS Hong, KT Mehr, L Backert, G Finak, ... The Lancet 390 (10101), 1511-1520, 2017 | 530 | 2017 |
| Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments A McDavid, G Finak, PK Chattopadyay, M Dominguez, L Lamoreaux, ... Bioinformatics 29 (4), 461-467, 2013 | 415 | 2013 |
| Standardizing flow cytometry immunophenotyping analysis from the human immunophenotyping consortium G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ... Scientific reports 6 (1), 1-11, 2016 | 313 | 2016 |
| COMPASS identifies T-cell subsets correlated with clinical outcomes L Lin, G Finak, K Ushey, C Seshadri, TR Hawn, N Frahm, TJ Scriba, ... Nature biotechnology 33 (6), 610-616, 2015 | 278 | 2015 |
| Regulation of endocytosis via the oxygen-sensing pathway Y Wang, O Roche, MS Yan, G Finak, AJ Evans, JL Metcalf, BE Hast, ... Nature medicine 15 (3), 319-324, 2009 | 228 | 2009 |
| OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis G Finak, J Frelinger, W Jiang, EW Newell, J Ramey, MM Davis, ... PLoS computational biology 10 (8), e1003806, 2014 | 202 | 2014 |
| flowCore: Basic structures for flow cytometry data B Ellis, P Haaland, F Hahne, N Le Meur, N Gopalakrishnan, J Spidlen, ... R package version 1 (0), 2019 | 201 | 2019 |
| Gene expression signatures of morphologically normal breast tissue identify basal-like tumors G Finak, S Sadekova, F Pepin, M Hallett, S Meterissian, F Halwani, ... Breast Cancer Research 8, 1-18, 2006 | 180 | 2006 |
| Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factor–mediated upregulation of caveolin-1 Y Wang, O Roche, C Xu, EH Moriyama, P Heir, J Chung, FC Roos, ... Proceedings of the National Academy of Sciences 109 (13), 4892-4897, 2012 | 153 | 2012 |
| Vaccination induces HIV broadly neutralizing antibody precursors in humans DJ Leggat, KW Cohen, JR Willis, WJ Fulp, AC Decamp, O Kalyuzhniy, ... Science 378 (6623), eadd6502, 2022 | 147 | 2022 |
| Merging mixture components for cell population identification in flow cytometry G Finak, A Bashashati, R Brinkman, R Gottardo Advances in bioinformatics 2009 (1), 247646, 2009 | 146 | 2009 |
| Distinct activation thresholds of human conventional and innate-like memory T cells CK Slichter, A McDavid, HW Miller, G Finak, BJ Seymour, JP McNevin, ... JCI insight 1 (8), 2016 | 145 | 2016 |
| flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification M Malek, MJ Taghiyar, L Chong, G Finak, R Gottardo, RR Brinkman Bioinformatics 31 (4), 606-607, 2014 | 133 | 2014 |
| Optimizing transformations for automated, high throughput analysis of flow cytometry data G Finak, JM Perez, A Weng, R Gottardo BMC bioinformatics 11, 1-13, 2010 | 119 | 2010 |
| Cytomegalovirus-specific T-cell reconstitution following letermovir prophylaxis after hematopoietic cell transplantation D Zamora, ER Duke, H Xie, BC Edmison, B Akoto, R Kiener, ... Blood, The Journal of the American Society of Hematology 138 (1), 34-43, 2021 | 99 | 2021 |
| Higher T-cell responses induced by DNA/rAd5 HIV-1 preventive vaccine are associated with lower HIV-1 infection risk in an efficacy trial HE Janes, KW Cohen, N Frahm, SC De Rosa, B Sanchez, J Hural, ... The Journal of infectious diseases 215 (9), 1376-1385, 2017 | 95 | 2017 |
| Highly multiplexed quantitation of gene expression on single cells MH Dominguez, PK Chattopadhyay, S Ma, L Lamoreaux, A McDavid, ... Journal of immunological methods 391 (1-2), 133-145, 2013 | 86 | 2013 |
Raphael GottardoLausanne University Hospital and University of LausanneEmail verificata su chuv.ch