Thomas A. Hopf

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Debora MarksSystems Biology, Harvard Medical School, Broad Institute of Harvard and MITEmail verificata su hms.harvard.edu
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringEmail verificata su sanderlab.org
Charlotta ScharfePrincipal Data Scientist, F. Hoffmann-La Roche, SwitzerlandEmail verificata su roche.com
John IngrahamGenerate Biomedicines, IncEmail verificata su csail.mit.edu
Anna G. GreenAssistant Professor, Manning College of Information and Computer Sciences, UMass, AmherstEmail verificata su umass.edu
Burkhard RostProfessor of Computer ScienceEmail verificata su tum.de
Andrea PagnaniProfessor at DISAT - Politecnico di Torino, and PI at the IIGMEmail verificata su polito.it
Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityEmail verificata su unibocconi.it
Frank PoelwijkGenerate Biomedicines LLCEmail verificata su generatebiomedicines.com
Michael Springerharvard medical schoolEmail verificata su hms.harvard.edu
Oliver KohlbacherProfessor for Applied Bioinformatics, University of TübingenEmail verificata su uni-tuebingen.de
Benjamin SchubertGroup Leader, ICB@Helmholtz Center MunichEmail verificata su helmholtz-muenchen.de
Agnes Toth-PetroczyMPI of Molecular Cell Biology and Genetics and Center for Systems Biology DresdenEmail verificata su mpi-cbg.de
Matúš KalašSenior Engineer / Infrastructure Scientist, Department of Informatics, University of BergenEmail verificata su uib.no
Richard BentonUniversity of LausanneEmail verificata su unil.ch
Gaetano T Montelione, Constellation...Rensselaer Polytechnic InstituteEmail verificata su rpi.edu
Maximilian HechtAmazon.com Inc.Email verificata su rostlab.org
Peter HönigschmidDepartment of Genome-Oriented Bioinformatics, TUM, WeihenstephanEmail verificata su wzw.tum.de
Stefan SeemayerComputational Biologist at BASF SEEmail verificata su seemayer.de
Denis KrompassSiemens AGEmail verificata su siemens.com

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Thomas A. Hopf

Scientific Consultant

Email verificata su thomashopf.com

Computational Biology


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
Protein 3D structure computed from evolutionary sequence variation DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ... PloS one 6 (12), e28766, 2011	1271	2011
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013	1108	2013
Protein structure prediction from sequence variation DS Marks, TA Hopf, C Sander Nature biotechnology 30 (11), 1072-1080, 2012	717	2012
Mutation effects predicted from sequence co-variation TA Hopf, JB Ingraham, FJ Poelwijk, CPI Schärfe, M Springer, C Sander, ... Nature biotechnology 35 (2), 128-135, 2017	674	2017
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues D Wang, B Eraslan, T Wieland, B Hallström, T Hopf, DP Zolg, J Zecha, ... Molecular systems biology 15 (2), e8503, 2019	662	2019
Three-dimensional structures of membrane proteins from genomic sequencing TA Hopf, LJ Colwell, R Sheridan, B Rost, C Sander, DS Marks Cell 149 (7), 1607-1621, 2012	599	2012
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... elife 3, e03430, 2014	541	2014
A systematic p53 mutation library links differential functional impact to cancer mutation pattern and evolutionary conservation E Kotler, O Shani, G Goldfeld, M Lotan-Pompan, O Tarcic, A Gershoni, ... Molecular cell 71 (1), 178-190. e8, 2018	277	2018
The EVcouplings Python framework for coevolutionary sequence analysis TA Hopf, AG Green, B Schubert, S Mersmann, CPI Schärfe, JB Ingraham, ... Bioinformatics 35 (9), 1582-1584, 2019	237	2019
Meltome atlas—thermal proteome stability across the tree of life A Jarzab, N Kurzawa, T Hopf, M Moerch, J Zecha, N Leijten, Y Bian, ... Nature methods 17 (5), 495-503, 2020	214	2020
FreeContact: fast and free software for protein contact prediction from residue co-evolution L Kaján, TA Hopf, M Kalaš, DS Marks, B Rost BMC bioinformatics 15, 1-6, 2014	193	2014
Structured states of disordered proteins from genomic sequences A Toth-Petroczy, P Palmedo, J Ingraham, TA Hopf, B Berger, C Sander, ... Cell 167 (1), 158-170. e12, 2016	151	2016
Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors TA Hopf, S Morinaga, S Ihara, K Touhara, DS Marks, R Benton Nature communications 6 (1), 6077, 2015	146	2015
Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis M Sjodt, K Brock, G Dobihal, PDA Rohs, AG Green, TA Hopf, AJ Meeske, ... Nature 556 (7699), 118-121, 2018	135	2018
Protein structure determination by combining sparse NMR data with evolutionary couplings Y Tang, YJ Huang, TA Hopf, C Sander, DS Marks, GT Montelione Nature methods 12 (8), 751-754, 2015	86	2015
Quantification and discovery of sequence determinants of protein‐per‐mRNA amount in 29 human tissues B Eraslan, D Wang, M Gusic, H Prokisch, BM Hallström, M Uhlén, ... Molecular systems biology 15 (2), e8513, 2019	78	2019
Homology-based inference sets the bar high for protein function prediction T Hamp, R Kassner, S Seemayer, E Vicedo, C Schaefer, D Achten, F Auer, ... BMC bioinformatics 14, 1-10, 2013	64	2013
Decrypting drug actions and protein modifications by dose-and time-resolved proteomics J Zecha, FP Bayer, S Wiechmann, J Woortman, N Berner, J Müller, ... Science 380 (6640), 93-101, 2023	47	2023
PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022	42	2022
Quantification of the effect of mutations using a global probability model of natural sequence variation TA Hopf, JB Ingraham, FJ Poelwijk, M Springer, C Sander, DS Marks arXiv preprint arXiv:1510.04612, 2015	40	2015

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