Niko Välimäki

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Veli MäkinenProfessor of Computer Science, University of HelsinkiEmail verificata su helsinki.fi
Kimmo PalinCancer Researcher, Research Program in Cancer Research, Univeristy of HelsinkiEmail verificata su helsinki.fi
Jouni SirénUC Santa Cruz Genomics InstituteEmail verificata su ucsc.edu
Esa PitkänenInstitute for Molecular Medicine Finland (FIMM), University of HelsinkiEmail verificata su helsinki.fi
Gonzalo NavarroUniversity of ChileEmail verificata su dcc.uchile.cl
Outi KilpivaaraUniversity of Helsinki, Memorial Sloan-Kettering Cancer CenterEmail verificata su helsinki.fi
Jussi TaipaleUniversity of CambridgeEmail verificata su sanger.ac.uk
Antti HonkelaProfessor, University of HelsinkiEmail verificata su helsinki.fi
Wolfgang GerlachNetAppEmail verificata su netapp.com
Leena SalmelaUniversity of HelsinkiEmail verificata su cs.helsinki.fi
John A LeesEMBL-EBIEmail verificata su ebi.ac.uk
Johannes FischerTU DortmundEmail verificata su cs.tu-dortmund.de
Diego ArroyueloDepartment of Computer Science, Escuela de Ingeniería, Pontificia Universidad Católica de ChileEmail verificata su uc.cl
Sebastian ManethProfessor für Informatik, Universität BremenEmail verificata su uni-bremen.de
Susana LadraUniversity of A Coruña, Centro de investigación CITICEmail verificata su udc.es
Kim NguyenAssistant Professor of Computer Science, Université Paris-Sud, FranceEmail verificata su lri.fr
Sohan SethLead Data Scientist, University of EdinburghEmail verificata su ed.ac.uk
Lu ChengInstitute of Biomedicine, University of Eastern Finland, FinlandEmail verificata su aalto.fi
Juha KärkkäinenDepartment of Computer scienceEmail verificata su cs.helsinki.fi
Simon GogKarlsruhe Institute of TechnologyEmail verificata su kit.edu

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Niko Välimäki

Postdoctoral researcher, University of Helsinki

Email verificata su cs.helsinki.fi - Home page

compressed data structures combinatorial algorithms for sequence analysis


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
CTCF/cohesin-binding sites are frequently mutated in cancer R Katainen, K Dave, E Pitkänen, K Palin, T Kivioja, N Välimäki, AE Gylfe, ... Nature genetics 47 (7), 818-821, 2015	475	2015
Indexing graphs for path queries with applications in genome research J Sirén, N Välimäki, V Mäkinen IEEE/ACM transactions on computational biology and bioinformatics 11 (2 …, 2014	308	2014
Storage and retrieval of highly repetitive sequence collections V Mäkinen, G Navarro, J Sirén, N Välimäki Journal of Computational Biology 17 (3), 281-308, 2010	250	2010
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera V Ahola, R Lehtonen, P Somervuo, L Salmela, P Koskinen, P Rastas, ... Nature communications 5 (1), 4737, 2014	243	2014
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes JA Lees, M Vehkala, N Välimäki, SR Harris, C Chewapreecha, ... Nature communications 7 (1), 12797, 2016	224	2016
Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations A McNally, Y Oren, D Kelly, B Pascoe, S Dunn, T Sreecharan, M Vehkala, ... PLoS genetics 12 (9), e1006280, 2016	203	2016
Global and regional dissemination and evolution of Burkholderia pseudomallei C Chewapreecha, MTG Holden, M Vehkala, N Välimäki, Z Yang, ... Nature microbiology 2 (4), 1-8, 2017	172	2017
Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis LA Weinert, RR Chaudhuri, J Wang, SE Peters, J Corander, T Jombart, ... Nature communications 6 (1), 6740, 2015	154	2015
Genetic and epigenetic characteristics of inflammatory bowel Disease–Associated colorectal cancer K Rajamäki, A Taira, R Katainen, N Välimäki, A Kuosmanen, RM Plaketti, ... Gastroenterology 161 (2), 592-607, 2021	137	2021
Whole-genome sequencing of growth hormone (GH)-secreting pituitary adenomas N Välimäki, H Demir, E Pitkänen, E Kaasinen, A Karppinen, L Kivipelto, ... The Journal of Clinical Endocrinology & Metabolism 100 (10), 3918-3927, 2015	102	2015
Fast scaffolding with small independent mixed integer programs L Salmela, V Mäkinen, N Välimäki, J Ylinen, E Ukkonen Bioinformatics 27 (23), 3259-3265, 2011	102	2011
Space-efficient algorithms for document retrieval N Välimäki, V Mäkinen Annual Symposium on Combinatorial Pattern Matching, 205-215, 2007	92	2007
Run-length compressed indexes are superior for highly repetitive sequence collections J Sirén, N Välimäki, V Mäkinen, G Navarro String Processing and Information Retrieval: 15th International Symposium …, 2009	91	2009
Exome-wide somatic mutation characterization of small bowel adenocarcinoma UA Hänninen, R Katainen, T Tanskanen, RM Plaketti, R Laine, ... PLoS genetics 14 (3), e1007200, 2018	82	2018
Genetic predisposition to uterine leiomyoma is determined by loci for genitourinary development and genome stability N Välimäki, H Kuisma, A Pasanen, O Heikinheimo, J Sjöberg, R Bützow, ... Elife 7, e37110, 2018	80	2018
Retrotransposon insertions can initiate colorectal cancer and are associated with poor survival T Cajuso, P Sulo, T Tanskanen, R Katainen, A Taira, UA Hänninen, ... Nature communications 10 (1), 4022, 2019	75	2019
Deficient H2A. Z deposition is associated with genesis of uterine leiomyoma DG Berta, H Kuisma, N Välimäki, M Räisänen, M Jäntti, A Pasanen, ... Nature 596 (7872), 398-403, 2021	72	2021
Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer E Pitkänen, T Cajuso, R Katainen, E Kaasinen, N Välimäki, K Palin, ... Oncotarget 5 (3), 853, 2014	67	2014
Storage and retrieval of individual genomes V Mäkinen, G Navarro, J Sirén, N Välimäki Research in Computational Molecular Biology: 13th Annual International …, 2009	63	2009
Fast in-memory XPath search using compressed indexes D Arroyuelo, F Claude, S Maneth, V Maakinen, G Navarro, K Nguyên, ... Data Engineering (ICDE), 2010 IEEE 26th International Conference on, 417-428, 2010	56*	2010

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