| EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ... Bioinformatics 29 (10), 1325-1332, 2013 | 305 | 2013 |
| FreeContact: fast and free software for protein contact prediction from residue co-evolution L Kaján, TA Hopf, M Kalaš, DS Marks, B Rost BMC bioinformatics 15 (1), 85, 2014 | 193 | 2014 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 184 | 2016 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 5, 2014 | 69 | 2014 |
| The bio.tools registry of software tools and data resources for the life sciences J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ... Genome biology 20, 1-4, 2019 | 65 | 2019 |
| Community-driven development for computational biology at Sprints, Hackathons and Codefests S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ... BMC bioinformatics 15, 1-7, 2014 | 54 | 2014 |
| The Genomic HyperBrowser: an analysis web server for genome-scale data GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ... Nucleic acids research 41 (W1), W133-W141, 2013 | 48 | 2013 |
| The EMBRACE web service collection S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ... Nucleic acids research 38 (suppl_2), W683-W688, 2010 | 47 | 2010 |
| Identifying elemental genomic track types and representing them uniformly S Gundersen, M Kalaš, O Abul, A Frigessi, E Hovig, GK Sandve BMC bioinformatics 12, 1-17, 2011 | 40 | 2011 |
| BioXSD: the common data-exchange format for everyday bioinformatics web services M Kalaš, P Puntervoll, A Joseph, E Bartaševičiūtė, A Töpfer, ... Bioinformatics 26 (18), i540-i546, 2010 | 33 | 2010 |
| The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update Nucleic Acids Research, gkae410, 2024 | 31 | 2024 |
| Robust cross-platform workflows: how technical and scientific communities collaborate to develop, test and share best practices for data analysis S Möller, SW Prescott, L Wirzenius, P Reinholdtsen, B Chapman, P Prins, ... Data Science and Engineering 2 (3), 232-244, 2017 | 29 | 2017 |
| BioSimulators: a central registry of simulation engines and services for recommending specific tools B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ... Nucleic acids research 50 (W1), W108-W114, 2022 | 22 | 2022 |
| Community curation of bioinformatics software and data resources J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raček, ... Briefings in bioinformatics 21 (5), 1697-1705, 2020 | 21 | 2020 |
| Workshop on laboratory protocol standards for the molecular methods database T Klingström, L Soldatova, R Stevens, TE Roos, MA Swertz, KM Müller, ... New biotechnology 30 (2), 109-113, 2013 | 20 | 2013 |
| Perspectives on automated composition of workflows in the life sciences AL Lamprecht, M Palmblad, J Ison, V Schwämmle, MS Al Manir, I Altintas, ... F1000Research 10, 2021 | 18 | 2021 |
| Bioimage analysis workflows: community resources to navigate through a complex ecosystem P Paul-Gilloteaux, S Tosi, JK Hériché, A Gaignard, H Ménager, R Marée, ... F1000Research 10, 2021 | 17 | 2021 |
| Using registries to integrate bioinformatics tools and services into workbench environments H Ménager, M Kalaš, K Rapacki, J Ison International Journal on Software Tools for Technology Transfer 18, 581-586, 2016 | 14 | 2016 |
| EDAM: The bioscientific data analysis ontology (update 2021)[version 1; not peer reviewed] M Black, L Lamothe, H Eldakroury, M Kierkegaard, A Priya, A Machinda, ... F1000, 2021 | 13 | 2021 |
| Norwegian e-infrastructure for life sciences (NeLS) KM Tekle, S Gundersen, K Klepper, LA Bongo, IA Raknes, X Li, W Zhang, ... F1000Research 7, 2018 | 12 | 2018 |
