| MOODS: fast search for position weight matrix matches in DNA sequences J Korhonen, P Martinmäki, C Pizzi, P Rastas, E Ukkonen Bioinformatics 25 (23), 3181-3182, 2009 | 191 | 2009 |
| MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures S Girotto, C Pizzi, M Comin Bioinformatics 32 (17), i567-i575, 2016 | 76 | 2016 |
| Finding significant matches of position weight matrices in linear time C Pizzi, P Rastas, E Ukkonen IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (1), 69-79, 2009 | 40 | 2009 |
| A multistep bioinformatic approach detects putative regulatory elements in gene promoters S Bortoluzzi, A Coppe, A Bisognin, C Pizzi, GA Danieli BMC bioinformatics 6, 1-15, 2005 | 29 | 2005 |
| MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics C Pizzi Algorithms for Molecular Biology 11, 1-10, 2016 | 28 | 2016 |
| Sequence similarity measures based on bounded hamming distance A Apostolico, C Guerra, GM Landau, C Pizzi Theoretical Computer Science 638, 76-90, 2016 | 28 | 2016 |
| Fast profile matching algorithms—A survey C Pizzi, E Ukkonen Theoretical Computer Science 395 (2-3), 137-157, 2008 | 28 | 2008 |
| Comparison of microbiome samples: methods and computational challenges M Comin, B Di Camillo, C Pizzi, F Vandin Briefings in bioinformatics 22 (1), 88-95, 2021 | 25 | 2021 |
| Fast search algorithms for position specific scoring matrices C Pizzi, P Rastas, E Ukkonen International Conference on Bioinformatics Research and Development, 239-250, 2007 | 22 | 2007 |
| Metagenomic reads binning with spaced seeds S Girotto, M Comin, C Pizzi Theoretical Computer Science 698, 88-99, 2017 | 19 | 2017 |
| Irredundant tandem motifs L Parida, C Pizzi, SE Rombo Theoretical Computer Science 525, 89-102, 2014 | 18 | 2014 |
| Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing E Petrucci, L Noé, C Pizzi, M Comin Journal of Computational Biology 27 (2), 223-233, 2020 | 17 | 2020 |
| Efficient computation of spaced seed hashing with block indexing S Girotto, M Comin, C Pizzi BMC bioinformatics 19, 29-38, 2018 | 17 | 2018 |
| Speedup for a periodic subgraph miner A Apostolico, M Barbares, C Pizzi Information Processing Letters 111 (11), 521-523, 2011 | 17 | 2011 |
| Motif discovery by monotone scores A Apostolico, C Pizzi Discrete Applied Mathematics 155 (6-7), 695-706, 2007 | 16 | 2007 |
| Fast Approximation of Frequent k-Mers and Applications to Metagenomics L Pellegrina, C Pizzi, F Vandin Journal of Computational Biology 27 (4), 534-549, 2020 | 15 | 2020 |
| Efficient algorithms for the discovery of gapped factors A Apostolico, C Pizzi, E Ukkonen Algorithms for Molecular Biology 6, 1-10, 2011 | 15 | 2011 |
| Higher recall in metagenomic sequence classification exploiting overlapping reads S Girotto, M Comin, C Pizzi BMC genomics 18, 69-79, 2017 | 14 | 2017 |
| Detecting seeded motifs in DNA sequences C Pizzi, S Bortoluzzi, A Bisognin, A Coppe, GA Danieli Nucleic Acids Research 33 (15), e135-e135, 2005 | 14 | 2005 |
| Monotone scoring of patterns with mismatches A Apostolico, C Pizzi Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen …, 2004 | 13 | 2004 |
