| An objective comparison of cell-tracking algorithms V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ... Nature methods 14 (12), 1141-1152, 2017 | 602 | 2017 |
| Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment S Reiss, I Rebhan, P Backes, I Romero-Brey, H Erfle, P Matula, L Kaderali, ... Cell host & microbe 9 (1), 32-45, 2011 | 559 | 2011 |
| A benchmark for comparison of cell tracking algorithms M Maška, V Ulman, D Svoboda, P Matula, P Matula, C Ederra, A Urbiola, ... Bioinformatics 30 (11), 1609-1617, 2014 | 502 | 2014 |
| Federated learning enables big data for rare cancer boundary detection S Pati, U Baid, B Edwards, M Sheller, SH Wang, GA Reina, P Foley, ... Nature communications 13 (1), 7346, 2022 | 207 | 2022 |
| Cell tracking accuracy measurement based on comparison of acyclic oriented graphs P Matula, M Maška, DV Sorokin, P Matula, C Ortiz-de-Solórzano, ... PloS one 10 (12), e0144959, 2015 | 118 | 2015 |
| An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy M Kozubek, P Matula Journal of Microscopy 200 (3), 206-217, 2000 | 100 | 2000 |
| The cell tracking challenge: 10 years of objective benchmarking M Maška, V Ulman, P Delgado-Rodriguez, E Gómez-de-Mariscal, ... Nature Methods 20 (7), 1010-1020, 2023 | 99 | 2023 |
| Automated multi-view 3d image acquisition in human genome research M Kozubek, P Matula, H Eipel, M Hausmann Proceedings. First International Symposium on 3D Data Processing …, 2002 | 78 | 2002 |
| Combined confocal and wide‐field high‐resolution cytometry of fluorescent in situ hybridization‐stained cells M Kozubek, S Kozubek, E Lukášová, E Bártová, M Skalníková, P Matula, ... Cytometry: The Journal of the International Society for Analytical Cytology …, 2001 | 76 | 2001 |
| Fibroblast growth factor and canonical WNT/β-catenin signaling cooperate in suppression of chondrocyte differentiation in experimental models of FGFR signaling in cartilage M Buchtova, V Oralova, A Aklian, J Masek, I Vesela, Z Ouyang, ... Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1852 (5), 839-850, 2015 | 75 | 2015 |
| miR-17-5p regulates endocytic trafficking through targeting TBC1D2/Armus A Serva, B Knapp, YT Tsai, C Claas, T Lisauskas, P Matula, N Harder, ... PLoS One 7 (12), e52555, 2012 | 56 | 2012 |
| Phosphorylation-dependent feedback inhibition of RIG-I by DAPK1 identified by kinome-wide siRNA screening J Willemsen, O Wicht, JC Wolanski, N Baur, S Bastian, DA Haas, P Matula, ... Molecular cell 65 (3), 403-415. e8, 2017 | 55 | 2017 |
| Single‐cell‐based image analysis of high‐throughput cell array screens for quantification of viral infection P Matula, A Kumar, I Wörz, H Erfle, R Bartenschlager, R Eils, K Rohr Cytometry Part A: The Journal of the International Society for Advancement …, 2009 | 55 | 2009 |
| DIC image segmentation of dense cell populations by combining deep learning and watershed F Lux, P Matula 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019 …, 2019 | 51 | 2019 |
| Fast point-based 3-D alignment of live cells P Matula, P Matula, M Kozubek, V Dvorak IEEE Transactions on Image Processing 15 (8), 2388-2396, 2006 | 47 | 2006 |
| Automated acquisition and processing of multidimensional image data in confocal in vivo microscopy M Kozubek, P Matula, P Matula, S Kozubek Microscopy research and technique 64 (2), 164-175, 2004 | 43 | 2004 |
| Precise 3D image alignment in micro‐axial tomography P Matula, M Kozubek, F Staier, M Hausmann Journal of Microscopy 209 (2), 126-142, 2003 | 37 | 2003 |
| The SUMOylation pathway restricts gene transduction by adeno-associated viruses C Hölscher, F Sonntag, K Henrich, Q Chen, J Beneke, P Matula, K Rohr, ... PLoS pathogens 11 (12), e1005281, 2015 | 36 | 2015 |
| Normalizing for individual cell population context in the analysis of high-content cellular screens B Knapp, I Rebhan, A Kumar, P Matula, NA Kiani, M Binder, H Erfle, ... BMC bioinformatics 12, 1-14, 2011 | 31 | 2011 |
| Cell segmentation by combining marker-controlled watershed and deep learning F Lux, P Matula arXiv preprint arXiv:2004.01607, 2020 | 30 | 2020 |
