Susan P Holmes

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140 articoli

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Paul J McMurdiePrincipal Bioinformatics Scientist at D2G OncologyEmail verificata su d2g-oncology.com
Benjamin CallahanAssociate Professor, NC State UniversityEmail verificata su ncsu.edu
David RelmanStanford UniversityEmail verificata su stanford.edu
Catherine BlishStanfordEmail verificata su stanford.edu
Robert ShaferProfessor of Medicine, Stanford UniversityEmail verificata su stanford.edu
Michael RosenHead of Computational Biology, D2G Oncology, Inc.Email verificata su d2g-oncology.com
Kris SankaranUniversity of Wisconsin - MadisonEmail verificata su wisc.edu
Julia FukuyamaAssistant Professor, Department of Statistics, Indiana University BloomingtonEmail verificata su fhcrc.org
Diana M. ProctorUniversity of Texas Health Science Center at Houston | McGovern Medical SchoolEmail verificata su uth.tmc.edu
Christof SeilerMaastricht University, University Hospital Zurich, and University of ZurichEmail verificata su maastrichtuniversity.nl
Ronald J WongStanford University School of MedicineEmail verificata su stanford.edu
Deborah M GordonProfessor, Dept. of Biology, Stanford UniversityEmail verificata su stanford.edu
Thanmayi RanganathStanford School of MedicineEmail verificata su stanford.edu
Pratheepa JeganathanAssistant Professor, McMaster UniversityEmail verificata su mcmaster.ca
Claire DonnatUniversity of ChicagoEmail verificata su uchicago.edu
Alfred SpormannStanfordEmail verificata su stanford.edu
Lan Huong NguyenGoogle LLCEmail verificata su google.com
Daniela Aliaga GoltsmanAssociate Director, Metagenomi IncEmail verificata su berkeley.edu
Christine L. SunSenior research associate, Center of Microbiome Research, The Ohio State UniversityEmail verificata su osu.edu
Karen VogtmannUniversity of WarwickEmail verificata su warwick.ac.uk

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Susan P Holmes

Professor of Statistics, Stanford University

Email verificata su stat.stanford.edu - Home page

Statistics and Biology Immunology Microbial Ecology Reproducible research MCMC


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
DADA2: High-resolution sample inference from Illumina amplicon data BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJA Johnson, ... Nature methods 13 (7), 581-583, 2016	24918	2016
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data PJ McMurdie, S Holmes PloS one 8 (4), e61217, 2013	17005	2013
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	16219	2019
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis BJ Callahan, PJ McMurdie, SP Holmes The ISME Journal, 1-5, 2017	3082	2017
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. PJ McMurdie, S Holmes PLOS Computational Biology 10 (4), 2014	2934	2014
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data NM Davis, D Proctor, SP Holmes, DA Relman, BJ Callahan biorxiv, 2018	2409	2018
Temporal and spatial variation of the human microbiota during pregnancy DB DiGiulio, BJ Callahan, PJ McMurdie, EK Costello, DJ Lyell, ... Proceedings of the National Academy of Sciences 112 (35), 11060-11065, 2015	1213	2015
Bootstrap confidence levels for phylogenetic trees B Efron, E Halloran, S Holmes Proceedings of the National Academy of Sciences 93 (23), 13429-13429, 1996	1075	1996
Variability in the analysis of a single neuroimaging dataset by many teams R Botvinik-Nezer, F Holzmeister, CF Camerer, A Dreber, J Huber, ... Nature 582 (7810), 84-88, 2020	1017	2020
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses BJ Callahan, K Sankaran, JA Fukuyama, PJ McMurdie, SP Holmes F1000Research 5, 2016	1017	2016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	1005	2018
Geometry of the space of phylogenetic trees LJ Billera, SP Holmes, K Vogtmann Advances in Applied Mathematics 27 (4), 733-767, 2001	809	2001
Advancing our understanding of the human microbiome using QIIME JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ... Methods in enzymology 531, 371-444, 2013	655	2013
A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes F Cruciani, P Santolamazza, P Shen, V Macaulay, P Moral, A Olckers, ... American journal of human genetics 70 (5), 1197, 2002	499	2002
Colonic contribution to uremic solutes PA Aronov, FJG Luo, NS Plummer, Z Quan, S Holmes, TH Hostetter, ... Journal of the American Society of Nephrology 22 (9), 1769-1776, 2011	455	2011
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle A Gorvitovskaia, SP Holmes, SM Huse Microbiome 4 (15), DOI: 10.1186/s40168-016-0160-7, 2016	436	2016
Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage M Yan, SJ Pamp, J Fukuyama, PH Hwang, DY Cho, S Holmes, ... Cell host & microbe 14 (6), 631-640, 2013	391	2013
Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women B Callahan, D DiGiulio, D Goltsman, C Sun, E Costello, P Jeganathan, ... PNAS, 201705899, 2017	390	2017
Analysis of a nonreversible Markov chain sampler P Diaconis, S Holmes, RM Neal Annals of Applied Probability, 726-752, 2000	367	2000
The molecular architecture of the eukaryotic chaperonin TRiC/CCT A Leitner, LA Joachimiak, A Bracher, L Mönkemeyer, T Walzthoeni, ... Structure 20 (5), 814-825, 2012	331	2012

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