| Integrated Genomic Characterization of Papillary Thyroid Carcinoma Cell 159 (3), 679-690, 2014 | 2689* | 2014 |
| Intra-and inter-cellular rewiring of the human colon during ulcerative colitis CS Smillie, M Biton, J Ordovas-Montanes, KM Sullivan, G Burgin, ... Cell 178 (3), 714-730. e22, 2019 | 1047 | 2019 |
| Massively parallel single-nucleus RNA-seq with DroNc-seq N Habib, I Avraham-Davidi, A Basu, T Burks, K Shekhar, M Hofree, ... Nature methods 14 (10), 955-958, 2017 | 997 | 2017 |
| Network-based stratification of tumor mutations M Hofree, JP Shen, H Carter, A Gross, T Ideker Nature methods 10 (11), 1108-1115, 2013 | 895 | 2013 |
| A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia N Baryawno, D Przybylski, MS Kowalczyk, Y Kfoury, N Severe, ... Cell 177 (7), 1915-1932. e16, 2019 | 740 | 2019 |
| The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation A Wallrapp, SJ Riesenfeld, PR Burkett, REE Abdulnour, J Nyman, ... Nature 549 (7672), 351-356, 2017 | 590 | 2017 |
| Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders G Novarino, AG Fenstermaker, MS Zaki, M Hofree, JL Silhavy, ... science 343 (6170), 506-511, 2014 | 567 | 2014 |
| A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ... Nature medicine 26 (5), 792-802, 2020 | 525 | 2020 |
| A decade of systems biology HY Chuang, M Hofree, T Ideker Annual review of cell and developmental biology 26 (1), 721-744, 2010 | 434 | 2010 |
| Spatially organized multicellular immune hubs in human colorectal cancer K Pelka, M Hofree, JH Chen, S Sarkizova, JD Pirl, V Jorgji, A Bejnood, ... Cell 184 (18), 4734-4752. e20, 2021 | 426 | 2021 |
| Anatomically and functionally distinct lung mesenchymal populations marked by Lgr5 and Lgr6 JH Lee, T Tammela, M Hofree, J Choi, ND Marjanovic, S Han, D Canner, ... Cell 170 (6), 1149-1163. e12, 2017 | 361 | 2017 |
| Emergence of a high-plasticity cell state during lung cancer evolution ND Marjanovic, M Hofree, JE Chan, D Canner, K Wu, M Trakala, ... Cancer cell 38 (2), 229-246. e13, 2020 | 296 | 2020 |
| Regenerative potential of prostate luminal cells revealed by single-cell analysis WR Karthaus, M Hofree, D Choi, EL Linton, M Turkekul, A Bejnood, ... Science 368 (6490), 497-505, 2020 | 224 | 2020 |
| Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps B Chen, S Cherie’R, ET McKinley, AJ Simmons, MA Ramirez-Solano, ... Cell 184 (26), 6262-6280. e26, 2021 | 193 | 2021 |
| Interaction landscape of inherited polymorphisms with somatic events in cancer H Carter, R Marty, M Hofree, AM Gross, J Jensen, KM Fisch, X Wu, ... Cancer discovery 7 (4), 410-423, 2017 | 153 | 2017 |
| Inactivation of Capicua drives cancer metastasis RA Okimoto, F Breitenbuecher, VR Olivas, W Wu, B Gini, M Hofree, ... Nature genetics 49 (1), 87-96, 2017 | 153 | 2017 |
| Genotype to phenotype via network analysis H Carter, M Hofree, T Ideker Current opinion in genetics & development 23 (6), 611-621, 2013 | 149 | 2013 |
| Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss AM Gross, RK Orosco, JP Shen, AM Egloff, H Carter, M Hofree, ... Nature genetics 46 (9), 939-943, 2014 | 146 | 2014 |
| Exome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function ERF Mutations FW Huang, JM Mosquera, A Garofalo, C Oh, M Baco, A Amin-Mansour, ... Cancer discovery 7 (9), 973-983, 2017 | 124 | 2017 |
| Using functional signature ontology (FUSION) to identify mechanisms of action for natural products MB Potts, HS Kim, KW Fisher, Y Hu, YP Carrasco, GB Bulut, YH Ou, ... Science signaling 6 (297), ra90-ra90, 2013 | 87 | 2013 |
Trey IdekerUniversity of California San DiegoEmail verificata su ucsd.edu