| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1108 | 2013 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 436 | 2016 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 401 | 2019 |
| Limitations and potentials of current motif discovery algorithms J Hu, B Li, D Kihara Nucleic acids research 33 (15), 4899-4913, 2005 | 315 | 2005 |
| Protein-protein docking using region-based 3D Zernike descriptors V Venkatraman, YD Yang, L Sael, D Kihara BMC bioinformatics 10, 1-21, 2009 | 220 | 2009 |
| Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm J Skolnick, D Kihara, Y Zhang Proteins: Structure, Function, and Bioinformatics 56 (3), 502-518, 2004 | 215 | 2004 |
| TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints D Kihara, H Lu, A Kolinski, J Skolnick Proceedings of the National Academy of Sciences 98 (18), 10125-10130, 2001 | 184 | 2001 |
| Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding Y Zhang, D Kihara, J Skolnick Proteins: Structure, Function, and Bioinformatics 48 (2), 192-201, 2002 | 182 | 2002 |
| Enhanced automated function prediction using distantly related sequences and contextual association by PFP T Hawkins, S Luban, D Kihara Protein Science 15 (6), 1550-1556, 2006 | 177 | 2006 |
| Structure and inhibition of EV-D68, a virus that causes respiratory illness in children Y Liu, J Sheng, A Fokine, G Meng, WH Shin, F Long, RJ Kuhn, D Kihara, ... Science 347 (6217), 71-74, 2015 | 176 | 2015 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data T Hawkins, M Chitale, S Luban, D Kihara Proteins: Structure, Function, and Bioinformatics 74 (3), 566-582, 2009 | 166 | 2009 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 158 | 2011 |
| Fast protein tertiary structure retrieval based on global surface shape similarity L Sael, B Li, D La, Y Fang, K Ramani, R Rustamov, D Kihara Proteins: Structure, Function, and Bioinformatics 72 (4), 1259-1273, 2008 | 154 | 2008 |
| Defrosting the frozen approximation: PROSPECTOR—a new approach to threading J Skolnick, D Kihara Proteins: Structure, Function, and Bioinformatics 42 (3), 319-331, 2001 | 152 | 2001 |
| The PDB is a covering set of small protein structures D Kihara, J Skolnick Journal of molecular biology 334 (4), 793-802, 2003 | 148 | 2003 |
| Function prediction of uncharacterized proteins T Hawkins, D Kihara Journal of bioinformatics and computational biology 5 (01), 1-30, 2007 | 134 | 2007 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 125 | 2019 |
| The effect of long‐range interactions on the secondary structure formation of proteins D Kihara Protein Science 14 (8), 1955-1963, 2005 | 123 | 2005 |
| De novo main-chain modeling for EM maps using MAINMAST G Terashi, D Kihara Nature communications 9 (1), 1618, 2018 | 118 | 2018 |
Genki TerashiAssistant research scientist, Department of Biological Sciences, Purdue UniversityEmail verificata su purdue.edu