| A robust SNP barcode for typing Mycobacterium tuberculosis complex strains F Coll, R McNerney, JA Guerra-Assunção, JR Glynn, J Perdigão, ... Nature communications 5 (1), 4812, 2014 | 633 | 2014 |
| Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences F Coll, R McNerney, MD Preston, JA Guerra-Assunção, A Warry, ... Genome medicine 7, 1-10, 2015 | 437 | 2015 |
| Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ... Nature genetics 50 (2), 307-316, 2018 | 360 | 2018 |
| Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ... Elife 4, e05166, 2015 | 258 | 2015 |
| Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a … JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ... The Journal of infectious diseases 211 (7), 1154-1163, 2015 | 197 | 2015 |
| The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis TM Walker, P Miotto, CU Köser, PW Fowler, J Knaggs, Z Iqbal, M Hunt, ... The Lancet Microbe 3 (4), e265-e273, 2022 | 184 | 2022 |
| One health genomic surveillance of Escherichia coli demonstrates distinct lineages and mobile genetic elements in isolates from humans versus livestock C Ludden, KE Raven, D Jamrozy, T Gouliouris, B Blane, F Coll, ... MBio 10 (1), 10.1128/mbio. 02693-18, 2019 | 169 | 2019 |
| Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community F Coll, EM Harrison, MS Toleman, S Reuter, KE Raven, B Blane, ... Science translational medicine 9 (413), eaak9745, 2017 | 131 | 2017 |
| Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ... Science 374 (6574), eabl9551, 2021 | 130 | 2021 |
| Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ... BMC medicine 14, 1-13, 2016 | 121 | 2016 |
| SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences F Coll, K Mallard, MD Preston, S Bentley, J Parkhill, R McNerney, N Martin, ... Bioinformatics 28 (22), 2991-2993, 2012 | 114 | 2012 |
| PolyTB: a genomic variation map for Mycobacterium tuberculosis F Coll, M Preston, JA Guerra-Assunção, G Hill-Cawthorn, D Harris, ... Tuberculosis 94 (3), 346-354, 2014 | 112 | 2014 |
| Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ... Scientific reports 5 (1), 15443, 2015 | 108 | 2015 |
| Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis F Coll, KE Raven, GM Knight, B Blane, EM Harrison, D Leek, DA Enoch, ... The Lancet Microbe 1 (8), e328-e335, 2020 | 100 | 2020 |
| Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing KE Raven, T Gouliouris, H Brodrick, F Coll, NM Brown, R Reynolds, ... Clinical infectious diseases 64 (7), 886-893, 2017 | 98 | 2017 |
| Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages JE Phelan, F Coll, I Bergval, RM Anthony, R Warren, SL Sampson, ... BMC genomics 17, 1-12, 2016 | 97 | 2016 |
| Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing TG Clark, K Mallard, F Coll, M Preston, S Assefa, D Harris, S Ogwang, ... PloS one 8 (12), e83012, 2013 | 96 | 2013 |
| Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan A Ali, Z Hasan, R McNerney, K Mallard, G Hill-Cawthorne, F Coll, M Nair, ... PloS one 10 (2), e0117771, 2015 | 88 | 2015 |
| Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting J Perdigão, H Silva, D Machado, R Macedo, F Maltez, C Silva, L Jordao, ... BMC genomics 15, 1-20, 2014 | 83 | 2014 |
| Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance T Gouliouris, F Coll, C Ludden, B Blane, KE Raven, P Naydenova, ... Nature microbiology 6 (1), 103-111, 2021 | 72 | 2021 |
