| Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: fractional occupancy of electronegative pockets MA Young, B Jayaram, DL Beveridge Journal of the American Chemical Society 119 (1), 59-69, 1997 | 460 | 1997 |
| The electrostatic potential of B‐DNA B Jayaram, KA Sharp, B Honig Biopolymers: Original Research on Biomolecules 28 (5), 975-993, 1989 | 357 | 1989 |
| A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA R Lavery, K Zakrzewska, D Beveridge, TC Bishop, DA Case, ... Nucleic acids research 38 (1), 299-313, 2010 | 356 | 2010 |
| Solvation free energy of biomacromolecules: Parameters for a modified generalized Born model consistent with the AMBER force field B Jayaram, D Sprous, DL Beveridge The Journal of Physical Chemistry B 102 (47), 9571-9576, 1998 | 337 | 1998 |
| The role of water in protein-DNA recognition B Jayaram, T Jain Annu. Rev. Biophys. Biomol. Struct. 33 (1), 343-361, 2004 | 249 | 2004 |
| Sanjeevini: a freely accessible web-server for target directed lead molecule discovery B Jayaram, T Singh, G Mukherjee, A Mathur, S Shekhar, V Shekhar BMC bioinformatics 13, 1-13, 2012 | 239 | 2012 |
| Free energy analysis of the conformational preferences of A and B forms of DNA in solution B Jayaram, D Sprous, MA Young, DL Beveridge Journal of the American Chemical Society 120 (41), 10629-10633, 1998 | 232 | 1998 |
| μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA M Pasi, JH Maddocks, D Beveridge, TC Bishop, DA Case, T Cheatham III, ... Nucleic acids research 42 (19), 12272-12283, 2014 | 223 | 2014 |
| Free energy calculations of ion hydration: an analysis of the Born model in terms of microscopic simulations B Jayaram, R Fine, K Sharp, B Honig The Journal of Physical Chemistry 93 (10), 4320-4327, 1989 | 214 | 1989 |
| AADS - An Automated Active Site Identification, Docking, and Scoring Protocol for Protein Targets Based on Physicochemical Descriptors T Singh, D Biswas, B Jayaram Journal of chemical information and modeling 51 (10), 2515-2527, 2011 | 201 | 2011 |
| Do water molecules mediate protein-DNA recognition? CK Reddy, A Das, B Jayaram Journal of Molecular Biology 314 (3), 619-632, 2001 | 192 | 2001 |
| Modeling DNA in aqueous solutions: theoretical and computer simulation studies on the ion atmosphere of DNA B Jayaram, DL Beveridge Annual review of biophysics and biomolecular structure 25 (1), 367-394, 1996 | 182 | 1996 |
| Local dielectric environment of B-DNA in solution: results from a 14 ns molecular dynamics trajectory MA Young, B Jayaram, DL Beveridge The Journal of Physical Chemistry B 102 (39), 7666-7669, 1998 | 163 | 1998 |
| Inhibiting fungal multidrug resistance by disrupting an activator-Mediator interaction JL Nishikawa, A Boeszoermenyi, LA Vale-Silva, R Torelli, B Posteraro, ... Nature 530, 485-489, 2016 | 160 | 2016 |
| ParDOCK: an all atom energy based Monte Carlo docking protocol for protein-ligand complexes A Gupta, A Gandhimathi, P Sharma, B Jayaram Protein and peptide letters 14 (7), 632-646, 2007 | 159 | 2007 |
| A molecular thermodynamic view of DNA–drug interactions: a case study of 25 minor-groove binders SA Shaikh, SR Ahmed, B Jayaram Archives of biochemistry and biophysics 429 (1), 81-99, 2004 | 157 | 2004 |
| Free energy analysis of protein–DNA binding: the EcoRI endonuclease–DNA complex B Jayaram, KJ McConnell, SB Dixit, DL Beveridge Journal of Computational Physics 151 (1), 333-357, 1999 | 156 | 1999 |
| A modification of the generalized Born theory for improved estimates of solvation energies and pK shifts B Jayaram, Y Liu, DL Beveridge The Journal of chemical physics 109 (4), 1465-1471, 1998 | 154 | 1998 |
| A phenomenological model for predicting melting temperatures of DNA sequences G Khandelwal, J Bhyravabhotla PloS one 5 (8), e12433, 2010 | 148 | 2010 |
| Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins B Jayaram, K Bhushan, SR Shenoy, P Narang, S Bose, P Agrawal, ... Nucleic acids research 34 (21), 6195-6204, 2006 | 145 | 2006 |
Ashutosh ShandilyaGeorgia State University, ATL, USAEmail verificata su gsu.edu