Articoli con mandati relativi all'accesso pubblico - Aaron DarlingUlteriori informazioni
Disponibili pubblicamente: 66
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
F Ronquist, M Teslenko, P Van Der Mark, DL Ayres, A Darling, S Höhna, ...
Systematic biology 61 (3), 539-542, 2012
Mandati: US National Institutes of Health, Swedish Research Council
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
AE Darling, B Mau, NT Perna
PloS one 5 (6), e11147, 2010
Mandati: US National Institutes of Health
Insights into the phylogeny and coding potential of microbial dark matter
C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ...
Nature 499 (7459), 431-437, 2013
Mandati: Australian Research Council
The Amphimedon queenslandica genome and the evolution of animal complexity
M Srivastava, O Simakov, J Chapman, B Fahey, MEA Gauthier, T Mitros, ...
Nature 466 (7307), 720-726, 2010
Mandati: US National Institutes of Health, German Research Foundation
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
Mandati: US National Science Foundation, US Department of Energy, US National …
BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics
DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ...
Systematic biology 61 (1), 170-173, 2012
Mandati: US National Institutes of Health
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
Mandati: US National Institutes of Health, Howard Hughes Medical Institute
Reordering contigs of draft genomes using the Mauve aligner
AI Rissman, B Mau, BS Biehl, AE Darling, JD Glasner, NT Perna
Bioinformatics 25 (16), 2071-2073, 2009
Mandati: US National Institutes of Health
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
Mandati: US National Science Foundation, US Department of Energy, Swiss National …
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
Mandati: US National Science Foundation, US Department of Energy, Swiss National …
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ...
Genome biology 14, 1-20, 2013
Mandati: US National Institutes of Health
BEAGLE 3: improved performance, scaling, and usability for a high-performance computing library for statistical phylogenetics
DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ...
Systematic biology 68 (6), 1052-1061, 2019
Mandati: US National Science Foundation, Bill & Melinda Gates Foundation, US National …
Inference of homologous recombination in bacteria using whole-genome sequences
X Didelot, D Lawson, A Darling, D Falush
Genetics 186 (4), 1435-1449, 2010
Mandati: Science Foundation Ireland
DESMAN: a new tool for de novo extraction of strains from metagenomes
C Quince, TO Delmont, S Raguideau, J Alneberg, AE Darling, G Collins, ...
Genome biology 18, 1-22, 2017
Mandati: UK Medical Research Council, European Commission
CAMISIM: simulating metagenomes and microbial communities
A Fritz, P Hofmann, S Majda, E Dahms, J Dröge, J Fiedler, TR Lesker, ...
Microbiome 7, 1-12, 2019
Mandati: Helmholtz Association, UK Engineering and Physical Sciences Research Council
Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response
EA Becker, PM Seitzer, A Tritt, D Larsen, M Krusor, AI Yao, D Wu, ...
PLoS genetics 10 (11), e1004784, 2014
Mandati: US Department of Energy
Alignathon: a competitive assessment of whole-genome alignment methods
D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ...
Genome research 24 (12), 2077-2089, 2014
Mandati: US Department of Energy, US National Institutes of Health, Howard Hughes …
The metagenomics and metadesign of the subways and urban biomes (MetaSUB) international consortium inaugural meeting report
Microbiome 4 (1), 24, 2016
Mandati: Bill & Melinda Gates Foundation, US National Institutes of Health, National …
Visualization of biomedical data
SI O'Donoghue, BF Baldi, SJ Clark, AE Darling, JM Hogan, S Kaur, ...
Annual Review of Biomedical Data Science 1 (1), 275-304, 2018
Mandati: US National Institutes of Health
STRONG: metagenomics strain resolution on assembly graphs
C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ...
Genome biology 22, 1-34, 2021
Mandati: US National Institutes of Health, UK Biotechnology and Biological Sciences …
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