Aaron Darling

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Jonathan A. EisenProfessor, University of California, Davis (UC Davis), Department of Evolution and EcologyEmail verificata su ucdavis.edu
Nicole T. PernaProfessor of GeneticsEmail verificata su wisc.edu
Daniel L. AyresUniversity of MarylandEmail verificata su umd.edu
Marc A. SuchardProfessor, University of California, Los AngelesEmail verificata su ucla.edu
Fredrik RonquistProfessor, Swedish Museum of Natural History, Dept. Bioinformatics and GeneticsEmail verificata su nrm.se
John P. HuelsenbeckUniversity of California, BerkeleyEmail verificata su berkeley.edu
Sebastian HöhnaEmmy Noether Research Group Leader, Ludwig-Maximilians-Universität, MünchenEmail verificata su lmu.de
Bret LargetProfessor of Statistics and of Botany, University of WisconsinEmail verificata su wisc.edu
Steven P. DjordjevicProfessorEmail verificata su uts.edu.au
Guillaume Jospinbioinformatician at AnimalBiomeEmail verificata su animalbiome.com
Matthew Z DeMaereAIMI Pathway fellow, University of Technology SydneyEmail verificata su uts.edu.au
David CoilUC DavisEmail verificata su ucdavis.edu
Catherine M BurkeUniversity of Technology SydneyEmail verificata su uts.edu.au
Liang LiuProfessor of Statistics, UGAEmail verificata su uga.edu
Jenna Morgan LangPostdoc in the lab of Jonathan Eisen at UC DavisEmail verificata su lbl.gov
Alexander SczyrbaForschungszentrum Jülich (IBG-5), Bielefeld University, Centrum for Biotechnology (CeBiTec)Email verificata su fz-juelich.de
Toni ChapmanNSW Department of Primary IndustriesEmail verificata su dpi.nsw.gov.au
Mark A. RaganInstitute for Molecular Bioscience, The University of QueenslandEmail verificata su uq.edu.au
Xavier DidelotUniversity of WarwickEmail verificata su warwick.ac.uk
Piklu Roy ChowdhurySenior Research Associate at the Australian Institute for Microbiology and Infection UTS, AustraliaEmail verificata su uts.edu.au

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Aaron Darling

Illumina Australia; Professor @ University of Technology Sydney

Email verificata su illumina.com - Home page

algorithms for sequence analysis genome evolution high throughput sequencing


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space F Ronquist, M Teslenko, P Van Der Mark, DL Ayres, A Darling, S Höhna, ... Systematic biology 61 (3), 539-542, 2012	26440	2012
Mauve: multiple alignment of conserved genomic sequence with rearrangements ACE Darling, B Mau, FR Blattner, NT Perna Genome research 14 (7), 1394-1403, 2004	4973	2004
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement AE Darling, B Mau, NT Perna PloS one 5 (6), e11147, 2010	4092	2010
Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437, 2013	2449	2013
The Amphimedon queenslandica genome and the evolution of animal complexity M Srivastava, O Simakov, J Chapman, B Fahey, MEA Gauthier, T Mitros, ... Nature 466 (7307), 720-726, 2010	1176	2010
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data D Coil, G Jospin, AE Darling Bioinformatics 31 (4), 587-589, 2014	1122	2014
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017	797	2017
BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ... Systematic biology 61 (1), 170-173, 2012	699	2012
PhyloSift: phylogenetic analysis of genomes and metagenomes AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen PeerJ 2, e243, 2014	676*	2014
Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011	637	2011
Reordering contigs of draft genomes using the Mauve aligner AI Rissman, B Mau, BS Biehl, AE Darling, JD Glasner, NT Perna Bioinformatics 25 (16), 2071-2073, 2009	609	2009
The design, implementation, and evaluation of mpiBLAST A Darling, L Carey, W Feng proceedings of ClusterWorld 2003, 13-15, 2003	581	2003
Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T J Wei, MB Goldberg, V Burland, MM Venkatesan, W Deng, G Fournier, ... Infection and immunity 71 (5), 2775-2786, 2003	515	2003
An integrated pipeline for de novo assembly of microbial genomes A Tritt, JA Eisen, MT Facciotti, AE Darling Public Library of Science 7 (9), e42304, 2012	499	2012
Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ... PLoS biology 16 (8), e2006352, 2018	362	2018
Metagenomic sequencing of an in vitro-simulated microbial community JL Morgan, AE Darling, JA Eisen PloS one 5 (4), e10209, 2010	290	2010
Dynamics of genome rearrangement in bacterial populations AE Darling, I Miklós, MA Ragan PLoS genetics 4 (7), e1000128, 2008	277	2008
A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021	255	2021
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	247	2022
Patterns of gene flow define species of thermophilic Archaea H Cadillo-Quiroz, X Didelot, NL Held, A Herrera, A Darling, ML Reno, ... PLoS biology 10 (2), e1001265, 2012	240	2012

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