| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018 | 3944 | 2018 |
| Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2608 | 2005 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ... Nucleic acids research 44 (W1), W3-W10, 2016 | 2143 | 2016 |
| Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ... Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010 | 1864 | 2010 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1138 | 2018 |
| Manipulation of FASTQ data with Galaxy D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ... Bioinformatics 26 (14), 1783-1785, 2010 | 818 | 2010 |
| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature Microbiology 6 (1), 3-6, 2021 | 570* | 2021 |
| An encyclopedia of mouse DNA elements (Mouse ENCODE) JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ... Genome biology 13 (8), 418, 2012 | 498 | 2012 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ... Nucleic acids research 48 (W1), W395-W402, 2020 | 480 | 2020 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research 50 (W1), W345-W351, 2022 | 383 | 2022 |
| Cloudmap: a cloud-based pipeline for analysis of mutant genome sequences G Minevich, DS Park, D Blankenberg, RJ Poole, O Hobert Genetics 192 (4), 1249-1269, 2012 | 345 | 2012 |
| 28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007 | 322 | 2007 |
| Dissemination of scientific software with Galaxy ToolShed D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ... Genome biology 15, 1-3, 2014 | 274 | 2014 |
| Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ... Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014 | 261 | 2014 |
| A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly D Blankenberg, J Taylor, I Schenck, J He, Y Zhang, M Ghent, ... Genome research 17 (6), 960-964, 2007 | 172 | 2007 |
| Using galaxy to perform large‐scale interactive data analyses J Taylor, I Schenck, D Blankenberg, A Nekrutenko Current protocols in bioinformatics 19 (1), 10.5. 1-10.5. 25, 2007 | 163 | 2007 |
| Quantitative sequence-function relationships in proteins based on gene ontology V Sangar, DJ Blankenberg, N Altman, AM Lesk BMC bioinformatics 8, 1-15, 2007 | 113 | 2007 |
| Child weight gain trajectories linked to oral microbiota composition SJC Craig, D Blankenberg, ACL Parodi, IM Paul, LL Birch, JS Savage, ... Scientific reports 8 (1), 14030, 2018 | 72 | 2018 |
| Using galaxy to perform large‐scale interactive data analyses J Hillman‐Jackson, D Clements, D Blankenberg, J Taylor, A Nekrutenko, ... Current protocols in bioinformatics 38 (1), 10.5. 1-10.5. 47, 2012 | 68 | 2012 |
| Integrating diverse databases into an unified analysis framework: a Galaxy approach D Blankenberg, N Coraor, G Von Kuster, J Taylor, A Nekrutenko Database 2011, bar011, 2011 | 68 | 2011 |
