| lumi: a pipeline for processing Illumina microarray P Du, WA Kibbe, SM Lin Bioinformatics 24 (13), 1547-1548, 2008 | 2371 | 2008 |
| Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis P Du, X Zhang, CC Huang, N Jafari, WA Kibbe, L Hou, SM Lin BMC bioinformatics 11 (1), 587, 2010 | 2217 | 2010 |
| ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data LJ Zhu, C Gazin, ND Lawson, H Pagès, SM Lin, DS Lapointe, MR Green BMC bioinformatics 11 (1), 237, 2010 | 1147 | 2010 |
| Privacy in pharmacogenetics: An end-to-end case study of personalized warfarin dosing M Fredrikson, E Lantz, S Jha, S Lin, D Page, T Ristenpart 23rd USENIX Security Symposium (USENIX Security 14), 17-32, 2014 | 1105 | 2014 |
| Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching P Du, WA Kibbe, SM Lin Bioinformatics 22 (17), 2059-2065, 2006 | 947 | 2006 |
| The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ... Nature biotechnology 28 (8), 827, 2010 | 881 | 2010 |
| A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium SEQC/MAQC-III Consortium Nature Biotechnology 32 (9), 903-914, 2014 | 873 | 2014 |
| Model-based variance-stabilizing transformation for Illumina microarray data SM Lin, P Du, W Huber, WA Kibbe Nucleic acids research 36 (2), e11-e11, 2008 | 625 | 2008 |
| Transcriptional profiling of the Sonic hedgehog response: a critical role for N-myc in proliferation of neuronal precursors TG Oliver, LL Grasfeder, AL Carroll, C Kaiser, CL Gillingham, SM Lin, ... Proceedings of the National Academy of Sciences 100 (12), 7331-7336, 2003 | 442 | 2003 |
| Comparison of RNA-seq and microarray-based models for clinical endpoint prediction W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ... Genome biology 16 (1), 1-12, 2015 | 422 | 2015 |
| A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, ... The pharmacogenomics journal 10 (4), 278-291, 2010 | 364 | 2010 |
| Loss of patched and disruption of granule cell development in a pre-neoplastic stage of medulloblastoma TG Oliver, TA Read, JD Kessler, A Mehmeti, JF Wells, TTT Huynh, SM Lin, ... Development 132 (10), 2425-2439, 2005 | 312 | 2005 |
| Annotating the human genome with Disease Ontology JD Osborne, J Flatow, M Holko, SM Lin, WA Kibbe, LJ Zhu, MI Danila, ... BMC genomics 10 (Suppl 1), S6, 2009 | 303 | 2009 |
| Design and Anticipated Outcomes of the eMERGE‐PGx Project: A Multicenter Pilot for Preemptive Pharmacogenomics in Electronic Health Record Systems LJ Rasmussen‐Torvik, SC Stallings, AS Gordon, B Almoguera, ... Clinical Pharmacology & Therapeutics 96 (4), 482-489, 2014 | 266 | 2014 |
| Ultrastructural, immunofluorescence, and RNA evidence support the hypothesis of a “new” virus associated with Kawasaki disease AH Rowley, SC Baker, ST Shulman, KH Rand, MS Tretiakova, ... Journal of Infectious Diseases 203 (7), 1021-1030, 2011 | 166 | 2011 |
| Genome-wide DNA methylation indicates silencing of tumor suppressor genes in uterine leiomyoma A Navarro, P Yin, D Monsivais, SM Lin, P Du, JJ Wei, SE Bulun PloS one 7 (3), e33284, 2012 | 152 | 2012 |
| Data mining issues and opportunities for building nursing knowledge L Goodwin, M VanDyne, S Lin, S Talbert Journal of Biomedical Informatics 36 (4), 379-388, 2003 | 144 | 2003 |
| Opportunities for drug repositioning from phenome-wide association studies M Rastegar-Mojarad, Z Ye, JM Kolesar, SJ Hebbring, SM Lin Nature biotechnology 33 (4), 342-345, 2015 | 135 | 2015 |
| From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations P Du, G Feng, J Flatow, J Song, M Holko, WA Kibbe, SM Lin Bioinformatics 25 (12), i63-i68, 2009 | 135 | 2009 |
| Genomics of human intracranial aneurysm wall C Shi, IA Awad, N Jafari, S Lin, P Du, ZA Hage, R Shenkar, CC Getch, ... Stroke 40 (4), 1252-1261, 2009 | 132 | 2009 |