S. Cenk Sahinalp

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96 articoli

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Fereydoun HormozdiariAssociate Professor at University of California - DavisEmail verificata su ucdavis.edu
Evan EichlerProfessor of Genome Sciences, University of WashingtonEmail verificata su gs.washington.edu
Can AlkanBilkent University, Ankara, TurkeyEmail verificata su cs.bilkent.edu.tr
Faraz HachAssistant Professor at University of British ColumbiaEmail verificata su ubc.ca
Phuong DaoGoogleEmail verificata su google.com
Colin Collins, PhDProfessor of Urologic Sciences, University of British Columbia and Vancouver Prostate CentreEmail verificata su prostatecentre.com
Salem MalikicCancer Data Science Laboratory, National Cancer Institute, National Institutes of HealthEmail verificata su nih.gov
Andrew McPhersonAssistant Attending, Memorial Sloan Kettering Cancer CenterEmail verificata su mskcc.org
Iman HajirasoulihaAssociate Professor, Weill Cornell Medicine of Cornell University, New York CityEmail verificata su med.cornell.edu
Ibrahim NumanagićUniversity of VictoriaEmail verificata su uvic.ca
Sohrab ShahMemorial Sloan Kettering Cancer CenterEmail verificata su mskcc.org
Raheleh SalariEmail verificata su cs.stanford.edu
Funda ErgunProfessor of Computer Science, Indiana UniversityEmail verificata su iu.edu
Martin EsterDistinguished Professor of Computer Science, Simon Fraser UniversityEmail verificata su cs.sfu.ca
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgEmail verificata su informatik.uni-freiburg.de
Emre KarakocPrincipal Bioinformatician, Wellcome Sanger InstituteEmail verificata su sanger.ac.uk
Farid Rashidi MehrabadiNational Cancer Institute, NIHEmail verificata su nih.gov
Uzi VishkinProfessor, The University of Maryland Institute for Advanced Computer Studies (UMIACS) andEmail verificata su umd.edu
Kaiyuan ZhuUC San DiegoEmail verificata su ucsd.edu
Alexander WyattAssociate Professor, University of British ColumbiaEmail verificata su prostatecentre.com

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S. Cenk Sahinalp

Senior Investigator, Cancer Data Science Lab, National Cancer Institute, NIH

Email verificata su nih.gov - Home page

Bioinformatics Computational Cancer Biology Genomics Algorithms


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
A map of human genome variation from population scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010	8904	2010
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ... Bioinformatics 26 (13), 1608-1615, 2010	2617	2010
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1923*	2020
Personalized copy number and segmental duplication maps using next-generation sequencing C Alkan, JM Kidd, T Marques-Bonet, G Aksay, F Antonacci, F Hormozdiari, ... Nature genetics 41 (10), 1061-1067, 2009	996	2009
The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020	974	2020
Demographic history and rare allele sharing among human populations S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ... Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011	733	2011
Genomic hallmarks of localized, non-indolent prostate cancer M Fraser, VY Sabelnykova, TN Yamaguchi, LE Heisler, J Livingstone, ... Nature 541 (7637), 359-364, 2017	628	2017
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data A McPherson, F Hormozdiari, A Zayed, R Giuliany, G Ha, MGF Sun, ... PLoS computational biology 7 (5), e1001138, 2011	624	2011
Spatial genomic heterogeneity within localized, multifocal prostate cancer PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ... Nature genetics 47 (7), 736-745, 2015	547	2015
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp Genome research 19 (7), 1270-1278, 2009	387	2009
Widespread and functional RNA circularization in localized prostate cancer S Chen, V Huang, X Xu, J Livingstone, F Soares, J Jeon, Y Zeng, JT Hua, ... Cell 176 (4), 831-843. e22, 2019	377	2019
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021	355	2021
mrsFAST: a cache-oblivious algorithm for short-read mapping F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ... Nature methods 7 (8), 576-577, 2010	349	2010
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa RD Morin, G Aksay, E Dolgosheina, HA Ebhardt, V Magrini, ER Mardis, ... Genome research 18 (4), 571-584, 2008	345	2008
Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set I Sushko, S Novotarskyi, R Körner, AK Pandey, A Cherkasov, J Li, ... Journal of chemical information and modeling 50 (12), 2094-2111, 2010	274	2010
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010	274	2010
Biomolecular network motif counting and discovery by color coding N Alon, P Dao, I Hajirasouliha, F Hormozdiari, SC Sahinalp Bioinformatics 24 (13), i241-i249, 2008	253	2008
The structure and evolution of centromeric transition regions within the human genome X She, JE Horvath, Z Jiang, G Liu, TS Furey, L Christ, R Clark, T Graves, ... Nature 430 (7002), 857-864, 2004	224	2004
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ... The Journal of pathology 227 (3), 286-297, 2012	218	2012
The proteogenomic landscape of curable prostate cancer A Sinha, V Huang, J Livingstone, J Wang, NS Fox, N Kurganovs, ... Cancer Cell 35 (3), 414-427. e6, 2019	217	2019

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