| STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015 | 10652 | 2015 |
| The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ... Nucleic acids research, gkw937, 2016 | 7116 | 2016 |
| STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data D Szklarczyk, A Santos, C Von Mering, LJ Jensen, P Bork, M Kuhn Nucleic acids research 44 (D1), D380-D384, 2016 | 1407 | 2016 |
| EcoCyc: fusing model organism databases with systems biology IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ... Nucleic acids research 41 (D1), D605-D612, 2013 | 731 | 2013 |
| The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 677 | 2017 |
| EcoCyc: a comprehensive database of Escherichia coli biology IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ... Nucleic acids research 39 (suppl_1), D583-D590, 2010 | 646 | 2010 |
| RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008 | 631 | 2008 |
| IntOGen-mutations identifies cancer drivers across tumor types A Gonzalez-Perez, C Perez-Llamas, J Deu-Pons, D Tamborero, ... Nature methods 10 (11), 1081-1082, 2013 | 594 | 2013 |
| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 552 | 2016 |
| RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013 | 517 | 2013 |
| RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions H Salgado, S Gama-Castro, M Peralta-Gil, E Diaz-Peredo, ... Nucleic acids research 34 (suppl_1), D394-D397, 2006 | 484 | 2006 |
| EcoCyc: A comprehensive view of Escherichia coli biology IM Keseler, C Bonavides-Martínez, J Collado-Vides, S Gama-Castro, ... Nucleic acids research 37 (suppl_1), D464-D470, 2009 | 470 | 2009 |
| RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 39 (suppl_1), D98-D105, 2010 | 469 | 2010 |
| RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 A Santos-Zavaleta, H Salgado, S Gama-Castro, M Sánchez-Pérez, ... Nucleic acids research 47 (D1), D212-D220, 2019 | 388 | 2019 |
| RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K‐12 H Salgado, S Gama‐Castro, A Martínez‐Antonio, E Díaz‐Peredo, ... Nucleic Acids Research 32 (suppl_1), D303-D306, 2004 | 352 | 2004 |
| RNA interference of the salivary gland nitrophorin 2 in the triatomine bug Rhodnius prolixus (Hemiptera: Reduviidae) by dsRNA ingestion or injection RN Araujo, A Santos, FS Pinto, NF Gontijo, MJ Lehane, MH Pereira Insect biochemistry and molecular biology 36 (9), 683-693, 2006 | 343 | 2006 |
| RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 H Salgado, A Santos-Zavaleta, S Gama-Castro, D Millán-Zárate, ... Nucleic acids research 29 (1), 72-74, 2001 | 319 | 2001 |
| Deep Visual Proteomics defines single-cell identity and heterogeneity A Mund, F Coscia, A Kriston, R Hollandi, F Kovács, AD Brunner, E Migh, ... Nature Biotechnology 40 (8), 1231-1240, 2022 | 255 | 2022 |
| Plasma proteome profiling discovers novel proteins associated with non‐alcoholic fatty liver disease L Niu, PE Geyer, NJ Wewer Albrechtsen, LL Gluud, A Santos, S Doll, ... Molecular systems biology 15 (3), e8793, 2019 | 231 | 2019 |
| Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes A Santos, R Wernersson, LJ Jensen Nucleic acids research 43 (D1), D1140-D1144, 2015 | 229 | 2015 |