| Integrated intracellular organization and its variations in human iPS cells MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ... Nature 613 (7943), 345-354, 2023 | 91 | 2023 |
| OME-Zarr: a cloud-optimized bioimaging file format with international community support J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ... Histochemistry and Cell Biology 160 (3), 223-251, 2023 | 74 | 2023 |
| Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes KA Gerbin, T Grancharova, RM Donovan-Maiye, MC Hendershott, ... Cell Systems 12 (6), 670-687. e10, 2021 | 52 | 2021 |
| A deep generative model of 3D single-cell organization RM Donovan-Maiye, JM Brown, CK Chan, L Ding, C Yan, N Gaudreault, ... PLoS computational biology 18 (1), e1009155, 2022 | 28 | 2022 |
| Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ... BioRxiv, 2020.12. 08.415562, 2020 | 22 | 2020 |
| Integrative urban AI to expand coverage, access, and equity of urban data B Howe, JM Brown, B Han, B Herman, N Weber, A Yan, S Yang, Y Yang The European Physical Journal Special Topics 231 (9), 1741-1752, 2022 | 10 | 2022 |
| Mapping variation in the morphological landscape of human cells with optical pooled CRISPRi screening RLDLR Labitigan Stanford University, 2024 | 9 | 2024 |
| Laboratory-scale ai: Open-weight models are competitive with chatgpt even in low-resource settings R Wolfe, I Slaughter, B Han, B Wen, Y Yang, L Rosenblatt, B Herman, ... Proceedings of the 2024 ACM Conference on Fairness, Accountability, and …, 2024 | 6 | 2024 |
| Councils in action: automating the curation of municipal governance data for research E Maxfield Brown, N Weber Proceedings of the Association for Information Science and Technology 59 (1 …, 2022 | 4 | 2022 |
| Council data project: software for municipal data collection, analysis, and publication EM Brown, T Huynh, I Na, B Ledbetter, H Ticehurst, S Liu, E Gilles, S Cho, ... Journal of Open Source Software 6 (68), 3904, 2021 | 4 | 2021 |
| AICSImageIO: image reading, metadata conversion, and image writing for microscopy images in pure Python EM Brown, D Toloudis, J Sherman, MSB TL GitHub, 2021 | 3 | 2021 |
| AICSImageIO: Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python A Contributors https://github.com/AllenCellModeling/aicsimageio, 2021 | 3 | 2021 |
| Deactivation with and without Representation: The Role of Dispute Arbitration for Seattle Rideshare Drivers L Schwartz, N Weber, EM Brown OSF, 2023 | 2 | 2023 |
| DSDB: an open-source system for database versioning & curation J Brown, N Weber 2021 ACM/IEEE Joint Conference on Digital Libraries (JCDL), 299-307, 2021 | 2 | 2021 |
| Measuring Software Innovation with Open Source Software Development Data EM Brown, C Osborne, P Cihon, M Böhmecke-Schwafert, K Xu, M Boehm, ... arXiv preprint arXiv:2411.05087, 2024 | 1 | 2024 |
| Biomedical open source software: Crucial packages and hidden heroes A Nesbitt, B Veytsman, D Mietchen, EM Brown, J Howison, JF Pimentel, ... arXiv preprint arXiv:2404.06672, 2024 | 1 | 2024 |
| Soft-Search: Two Datasets to Study the Identification and Production of Research Software EM Brown, L Schwartz, RL Huang, N Weber 2023 ACM/IEEE Joint Conference on Digital Libraries (JCDL), 228-231, 2023 | 1 | 2023 |
| Speakerbox: few-shot learning for speaker identification with transformers EM Brown, T Huynh, N Weber Journal of Open Source Software 8 (83), 5132, 2023 | 1 | 2023 |
| NSF EAGER Software Sustainability: Planning and Action EM Brown, N Weber OSF, 2024 | | 2024 |
| Measuring Software Innovation with Open Source Software Development Data E Maxfield Brown, C Osborne, P Cihon, M Böhmecke-Schwafert, K Xu, ... arXiv e-prints, arXiv: 2411.05087, 2024 | | 2024 |
