| Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0 PC Carvalho, DB Lima, FV Leprevost, MDM Santos, JSG Fischer, ... Nature protocols 11 (1), 102-117, 2016 | 267 | 2016 |
| SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis DB Lima, TB de Lima, TS Balbuena, AGC Neves-Ferreira, VC Barbosa, ... Journal of proteomics 129, 51-55, 2015 | 107 | 2015 |
| Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins DB Lima, JT Melchior, J Morris, VC Barbosa, J Chamot-Rooke, ... Nature protocols 13 (3), 431-458, 2018 | 57 | 2018 |
| PepExplorer: a similarity-driven tool for analyzing de novo sequencing results FV Leprevost, RH Valente, DB Lima, J Perales, R Melani, JR Yates III, ... Molecular & Cellular Proteomics 13 (9), 2480-2489, 2014 | 47 | 2014 |
| Simple, efficient and thorough shotgun proteomic analysis with PatternLab V MDM Santos, DB Lima, JSG Fischer, MA Clasen, LU Kurt, ... Nature protocols 17 (7), 1553-1578, 2022 | 46 | 2022 |
| Optimization of a top-down proteomics platform for closely related pathogenic bacterial discrimination M Dupré, M Duchateau, C Malosse, D Borges-Lima, V Calvaresi, ... Journal of Proteome Research 20 (1), 202-211, 2020 | 32 | 2020 |
| XPlex: an effective, multiplex cross-linking chemistry for acidic residues M Fioramonte, HCR De Jesus, AJR Ferrari, DB Lima, RL Drekener, ... Analytical chemistry 90 (10), 6043-6050, 2018 | 31 | 2018 |
| Comparative proteomic analysis of the aging soleus and extensor digitorum longus rat muscles using TMT labeling and mass spectrometry DFS Chaves, PC Carvalho, DB Lima, H Nicastro, FM Lorenzeti, ... Journal of proteome research 12 (10), 4532-4546, 2013 | 28 | 2013 |
| An evaluation of the crystal structure of C-terminal truncated apolipoprotein AI in solution reveals structural dynamics related to lipid binding JT Melchior, RG Walker, J Morris, MK Jones, JP Segrest, DB Lima, ... Journal of Biological Chemistry 291 (10), 5439-5451, 2016 | 23 | 2016 |
| Effectively addressing complex proteomic search spaces with peptide spectrum matching D Borges, Y Perez-Riverol, FCS Nogueira, GB Domont, J Noda, ... Bioinformatics 29 (10), 1343-1344, 2013 | 22 | 2013 |
| Exploring the proteomic landscape of a gastric cancer biopsy with the shotgun imaging analyzer PF Aquino, DB Lima, J de Saldanha da Gama Fischer, RD Melani, ... Journal of proteome research 13 (1), 314-320, 2014 | 21 | 2014 |
| Optimized TMT-based quantitative cross-linking mass spectrometry strategy for large-scale interactomic studies M Ruwolt, L Schnirch, D Borges Lima, M Nadler-Holly, R Viner, F Liu Analytical chemistry 94 (13), 5265-5272, 2022 | 17 | 2022 |
| Trypanosoma cruzi immunoproteome: Calpain-like CAP5. 5 differentially detected throughout distinct stages of human Chagas disease cardiomyopathy MA Caminha, VMB de Lorena, W de Oliveira Júnior, J Perales, ... Journal of proteomics 194, 179-190, 2019 | 17 | 2019 |
| XlinkCyNET: a cytoscape application for visualization of protein interaction networks based on cross-linking mass spectrometry identifications DB Lima, Y Zhu, F Liu Journal of Proteome Research 20 (4), 1943-1950, 2021 | 16 | 2021 |
| Comprehensive identification of protein disulfide bonds with pepsin/trypsin digestion, Orbitrap HCD and Spectrum Identification Machine C Cui, T Liu, T Chen, J Lu, I Casaren, DB Lima, PC Carvalho, A Beuve, ... Journal of proteomics 198, 78-86, 2019 | 15 | 2019 |
| Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies Y Zhu, KC Akkaya, J Ruta, N Yokoyama, C Wang, M Ruwolt, DB Lima, ... Nature Communications 15 (1), 3290, 2024 | 14 | 2024 |
| RawVegetable–A data assessment tool for proteomics and cross-linking mass spectrometry experiments LU Kurt, MA Clasen, MDM Santos, TACB Souza, EC Andreassa, EB Lyra, ... Journal of proteomics 225, 103864, 2020 | 13 | 2020 |
| Quantitative proteomic map of the trypanosomatid Strigomonas culicis: the biological contribution of its endosymbiotic bacterium GVF Brunoro, RFS Menna-Barreto, AS Garcia-Gomes, C Boucinha, ... Protist 170 (6), 125698, 2019 | 10 | 2019 |
| DiagnoProt: a tool for discovery of new molecules by mass spectrometry ARF Silva, DB Lima, A Leyva, R Duran, C Batthyany, PF Aquino, JC Leal, ... Bioinformatics 33 (12), 1883-1885, 2017 | 9 | 2017 |
| Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics FV Leprevost, DB Lima, J Crestani, Y Perez-Riverol, N Zanchin, ... Journal of proteomics 89, 179-182, 2013 | 9 | 2013 |
Paulo Costa CarvalhoCarlos Chagas Institute, Fiocruz - Paraná, BrazilEmail verificata su pcarvalho.com