| Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5, 1-9, 2004 | 5696 | 2004 |
| Cytoscape 2.8: new features for data integration and network visualization ME Smoot, K Ono, J Ruscheinski, PL Wang, T Ideker Bioinformatics 27 (3), 431-432, 2011 | 5145 | 2011 |
| Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007 | 2789 | 2007 |
| A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012 | 1545 | 2012 |
| Fast statistical alignment RK Bradley, A Roberts, M Smoot, S Juvekar, J Do, C Dewey, I Holmes, ... PLoS computational biology 5 (5), e1000392, 2009 | 418 | 2009 |
| A human MAP kinase interactome S Bandyopadhyay, C Chiang, J Srivastava, M Gersten, S White, R Bell, ... Nature methods 7 (10), 801-805, 2010 | 243 | 2010 |
| Cytoscape: the network visualization tool for GenomeSpace workflows B Demchak, T Hull, M Reich, T Liefeld, M Smoot, T Ideker, JP Mesirov F1000Research 3, 2014 | 191 | 2014 |
| NetworkBLAST: comparative analysis of protein networks M Kalaev, M Smoot, T Ideker, R Sharan Bioinformatics 24 (4), 594-596, 2008 | 147 | 2008 |
| Exploring biological networks with Cytoscape software N Yeung, MS Cline, A Kuchinsky, ME Smoot, GD Bader Current Protocols in Bioinformatics 23 (1), 8.13. 1-8.13. 20, 2008 | 80 | 2008 |
| PiNGO: a Cytoscape plugin to find candidate genes in biological networks M Smoot, K Ono, T Ideker, S Maere Bioinformatics 27 (7), 1030-1031, 2011 | 55 | 2011 |
| Cytoscape 2.8 ME Smoot, K Ono, J Ruscheinski, PL Wang, T Ideker Bioinformatics 27 (3), 431-432, 2011 | 30 | 2011 |
| Assembling global maps of cellular function through integrative analysis of physical and genetic networks R Srivas, G Hannum, J Ruscheinski, K Ono, PL Wang, M Smoot, T Ideker Nature protocols 6 (9), 1308-1323, 2011 | 24 | 2011 |
| Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments ML Sierk, ME Smoot, EJ Bass, WR Pearson BMC bioinformatics 11, 1-15, 2010 | 24 | 2010 |
| Deep semantic protein representation for annotation, discovery, and engineering AS Schwartz, GJ Hannum, ZR Dwiel, ME Smoot, AR Grant, JM Knight, ... BioRxiv, 365965, 2018 | 23 | 2018 |
| The protein architecture of human secretory vesicles reveals differential regulation of signaling molecule secretion by protein kinases SJ Bark, J Wegrzyn, L Taupenot, M Ziegler, DT O'Connor, Q Ma, M Smoot, ... Public Library of Science 7 (8), e41134, 2012 | 15 | 2012 |
| Visualization of near-optimal sequence alignments ME Smoot, SA Guerlain, WR Pearson Bioinformatics 20 (6), 953-958, 2004 | 14 | 2004 |
| A system for visualizing and analyzing near-optimal protein sequence alignments ME Smoot, EJ Bass, SA Guerlain, WR Pearson Information Visualization 4 (3), 224-237, 2005 | 7 | 2005 |
| Network visualization and data analysis using Cytoscape M Smoot, T Ideker 中国化学会计算机化学专业委员会. 第十届全国计算 (机) 化学学术会议论文摘要集, 0 | 1 | |
| Facilitating secure execution of external workflows for genomic sequencing diagnostics M Smoot, J Ward, A French, R Taylor US Patent App. 17/935,476, 2023 | | 2023 |
| Dynamic graphical status summaries for nucelotide sequencing J Ward, R Constandse, M Smoot, M Beoris, A French US Patent App. 17/936,722, 2023 | | 2023 |
Trey IdekerUniversity of California San DiegoEmail verificata su ucsd.edu