| GIPSy: genomic island prediction software SC Soares, H Geyik, RTJ Ramos, PHCG de Sá, EGV Barbosa, ... Journal of Biotechnology 232, 2-11, 2016 | 140 | 2016 |
| The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains SC Soares, A Silva, E Trost, J Blom, R Ramos, A Carneiro, A Ali, ... PLoS One 8 (1), e53818, 2013 | 140 | 2013 |
| Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains JC Ruiz, V D'Afonseca, A Silva, A Ali, AC Pinto, AR Santos, AAMC Rocha, ... PloS one 6 (4), e18551, 2011 | 121 | 2011 |
| Inside the pan-genome-methods and software overview L Carlos Guimaraes, L Benevides de Jesus, M Vinicius Canario Viana, ... Current genomics 16 (4), 245-252, 2015 | 120 | 2015 |
| Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds D Barh, N Barve, K Gupta, S Chandra, N Jain, S Tiwari, N Leon-Sicairos, ... PloS one 8 (1), e52773, 2013 | 117 | 2013 |
| GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data FA Araujo, D Barh, A Silva, L Guimarães, RTJ Ramos Scientific reports 8 (1), 1794, 2018 | 105 | 2018 |
| PIPS: Pathogenicity Island Prediction Software SC Soares, VAC Abreu, RTJ Ramos, L Cerdeira, A Silva, J Baumbach, ... PloS one 7 (2), e30848, 2012 | 91 | 2012 |
| High-throughput sequencing of black pepper root transcriptome SMC Gordo, DG Pinheiro, ECO Moreira, SM Rodrigues, MC Poltronieri, ... BMC plant biology 12, 1-9, 2012 | 85 | 2012 |
| Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis A Silva, MPC Schneider, L Cerdeira, MS Barbosa, RTJ Ramos, ... Journal of bacteriology 193 (1), 323-324, 2011 | 73 | 2011 |
| Pan‐Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with … A Ali, A Naz, SC Soares, M Bakhtiar, S Tiwari, SS Hassan, F Hanan, ... BioMed research international 2015 (1), 139580, 2015 | 69 | 2015 |
| Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets A Ali, SC Soares, AR Santos, LC Guimarães, E Barbosa, SS Almeida, ... Gene 508 (2), 145-156, 2012 | 68 | 2012 |
| Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production SC Soares, E Trost, RTJ Ramos, AR Carneiro, AR Santos, AC Pinto, ... Journal of biotechnology 167 (2), 135-141, 2013 | 65 | 2013 |
| Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica AR Carneiro, RTJ Ramos, H Dall'Agnol, AC Pinto, S de Castro Soares, ... Journal of bacteriology 194 (23), 6689-6690, 2012 | 65 | 2012 |
| Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses AC Pinto, PHCG de Sá, RTJ Ramos, S Barbosa, HPM Barbosa, ... BMC genomics 15, 1-14, 2014 | 59 | 2014 |
| Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study LT Cerdeira, AR Carneiro, RTJ Ramos, SS de Almeida, MPC Schneider, ... Journal of microbiological methods 86 (2), 218-223, 2011 | 55 | 2011 |
| Performance comparison of deep learning autoencoders for cancer subtype detection using multi-omics data EF Franco, P Rana, A Cruz, VV Calderon, V Azevedo, RTJ Ramos, ... Cancers 13 (9), 2013, 2021 | 51 | 2021 |
| The Detection and Sequencing of a Broad-Host-Range Conjugative IncP-1β Plasmid in an Epidemic Strain of Mycobacterium abscessus subsp. bolletii SC Leao, CK Matsumoto, A Carneiro, RT Ramos, CL Nogueira, ... PLoS One 8 (4), e60746, 2013 | 44 | 2013 |
| Molecular characterisation of dengue virus type 1 reveals lineage replacement during circulation in Brazilian territory AR Carneiro, ACR Cruz, M Vallinoto, DV Melo, RTJ Ramos, ... Memorias do Instituto Oswaldo Cruz 107, 805-812, 2012 | 44 | 2012 |
| Prediction of new vaccine targets in the core genome of Corynebacterium pseudotuberculosis through omics approaches and reverse vaccinology CL Araújo, J Alves, W Nogueira, LC Pereira, AC Gomide, R Ramos, ... Gene 702, 36-45, 2019 | 40 | 2019 |
| Artificial neural networks for short-term forecasting of cases, deaths, and hospital beds occupancy in the COVID-19 pandemic at the Brazilian Amazon MB Braga, RS Fernandes, GN Souza Jr, JEC Rocha, CJF Dolácio, ... PloS one 16 (3), e0248161, 2021 | 39 | 2021 |
Artur Luiz da Costa da SilvaCentro de Genômica e Biologia de Sistemas, Instituto de Ciências Biológicas, Universidade Federal doEmail verificata su ufpa.br