| Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding D Schmidt, MD Wilson, B Ballester, PC Schwalie, GD Brown, A Marshall, ... Science 328 (5981), 1036-1040, 2010 | 850 | 2010 |
| Insights into hominid evolution from the gorilla genome sequence A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ... Nature 483 (7388), 169-175, 2012 | 835 | 2012 |
| Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages D Schmidt, PC Schwalie, MD Wilson, B Ballester, Â Gonçalves, C Kutter, ... Cell 148 (1), 335-348, 2012 | 664 | 2012 |
| A CTCF-independent role for cohesin in tissue-specific transcription D Schmidt, PC Schwalie, CS Ross-Innes, A Hurtado, GD Brown, ... Genome research 20 (5), 578-588, 2010 | 448 | 2010 |
| A stromal cell population that inhibits adipogenesis in mammalian fat depots PC Schwalie, H Dong, M Zachara, J Russeil, D Alpern, N Akchiche, ... Nature 559 (7712), 103-108, 2018 | 416 | 2018 |
| Insights into negative regulation by the glucocorticoid receptor from genome-wide profiling of inflammatory cistromes NH Uhlenhaut, GD Barish, TY Ruth, M Downes, M Karunasiri, C Liddle, ... Molecular cell 49 (1), 158-171, 2013 | 311 | 2013 |
| Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders L Uusküla-Reimand, H Hou, P Samavarchi-Tehrani, MV Rudan, M Liang, ... Genome biology 17, 1-22, 2016 | 253 | 2016 |
| Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules AJ Faure, D Schmidt, S Watt, PC Schwalie, MD Wilson, H Xu, RG Ramsay, ... Genome research 22 (11), 2163-2175, 2012 | 190 | 2012 |
| Reversible de-differentiation of mature white adipocytes into preadipocyte-like precursors during lactation QA Wang, A Song, W Chen, PC Schwalie, F Zhang, L Vishvanath, L Jiang, ... Cell metabolism 28 (2), 282-288. e3, 2018 | 163 | 2018 |
| GLUT3 is induced during epithelial-mesenchymal transition and promotes tumor cell proliferation in non-small cell lung cancer M Masin, J Vazquez, S Rossi, S Groeneveld, N Samson, PC Schwalie, ... Cancer & metabolism 2, 1-14, 2014 | 152 | 2014 |
| PD-1-cis IL-2R agonism yields better effectors from stem-like CD8+ T cells L Codarri Deak, V Nicolini, M Hashimoto, M Karagianni, PC Schwalie, ... Nature 610 (7930), 161-172, 2022 | 143 | 2022 |
| ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data V Gardeux, FPA David, A Shajkofci, PC Schwalie, B Deplancke Bioinformatics 33 (19), 3123-3125, 2017 | 131 | 2017 |
| The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer Cell 39 (3), 288-293, 2021 | 110 | 2021 |
| Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network C Gubelmann, PC Schwalie, SK Raghav, E Röder, T Delessa, ... elife 3, e03346, 2014 | 110 | 2014 |
| Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes PC Schwalie, MC Ward, CE Cain, AJ Faure, Y Gilad, DT Odom, P Flicek Genome biology 14, 1-15, 2013 | 90 | 2013 |
| Mechanism and effects of pulsatile GABA secretion from cytosolic pools in the human beta cell D Menegaz, DW Hagan, J Almaça, C Cianciaruso, R Rodriguez-Diaz, ... Nature metabolism 1 (11), 1110-1126, 2019 | 80 | 2019 |
| Latent regulatory potential of human-specific repetitive elements MC Ward, MD Wilson, NL Barbosa-Morais, D Schmidt, R Stark, Q Pan, ... Molecular cell 49 (2), 262-272, 2013 | 78 | 2013 |
| ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer W Chen, PC Schwalie, EV Pankevich, C Gubelmann, SK Raghav, ... Nature communications 10 (1), 1809, 2019 | 35 | 2019 |
| CAST-ChIP maps cell-type-specific chromatin states in the Drosophila central nervous system T Schauer, PC Schwalie, A Handley, CE Margulies, P Flicek, AG Ladurner Cell reports 5 (1), 271-282, 2013 | 35 | 2013 |
| Gonç alves D Schmidt, PC Schwalie, MD Wilson, B Ballester A., Kutter, C., Brown, GD, Marshall, A., Flicek, P., and Odom, DT, 335-348, 2012 | 26 | 2012 |
