| Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study JM Bryant, DM Grogono, D Greaves, J Foweraker, I Roddick, T Inns, ... The Lancet 381 (9877), 1551-1560, 2013 | 776 | 2013 |
| Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ... Nature 514 (7523), 494-497, 2014 | 670 | 2014 |
| Evolution and transmission of drug-resistant tuberculosis in a Russian population N Casali, V Nikolayevskyy, Y Balabanova, SR Harris, O Ignatyeva, ... Nature genetics 46 (3), 279-286, 2014 | 608 | 2014 |
| Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium JM Bryant, DM Grogono, D Rodriguez-Rincon, I Everall, KP Brown, ... Science 354 (6313), 751-757, 2016 | 560 | 2016 |
| Rapid whole-genome sequencing of Mycobacterium tuberculosis isolates directly from clinical samples AC Brown, JM Bryant, K Einer-Jensen, J Holdstock, DT Houniet, ... Journal of clinical microbiology 53 (7), 2230-2237, 2015 | 317 | 2015 |
| Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis CU Köser, JM Bryant, J Becq, ME Török, MJ Ellington, MA Marti-Renom, ... New England journal of medicine 369 (3), 290-292, 2013 | 272 | 2013 |
| Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data JM Bryant, AC Schürch, H Van Deutekom, SR Harris, JL De Beer, ... BMC infectious diseases 13, 1-12, 2013 | 247 | 2013 |
| Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study JM Bryant, SR Harris, J Parkhill, R Dawson, AH Diacon, P van Helden, ... The Lancet Respiratory Medicine 1 (10), 786-792, 2013 | 240 | 2013 |
| Genomic analysis of the causative agents of coccidiosis in domestic chickens AJ Reid, DP Blake, HR Ansari, K Billington, HP Browne, J Bryant, M Dunn, ... Genome research 24 (10), 1676-1685, 2014 | 223 | 2014 |
| Direct whole-genome sequencing of sputum accurately identifies drug-resistant Mycobacterium tuberculosis faster than MGIT culture sequencing RM Doyle, C Burgess, R Williams, R Gorton, H Booth, J Brown, JM Bryant, ... Journal of clinical microbiology 56 (8), 10.1128/jcm. 00666-18, 2018 | 190 | 2018 |
| Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination J Cudini, S Roy, CJ Houldcroft, JM Bryant, DP Depledge, H Tutill, P Veys, ... Proceedings of the National Academy of Sciences 116 (12), 5693-5698, 2019 | 177 | 2019 |
| Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences J Bryant, C Chewapreecha, SD Bentley Future microbiology 7 (11), 1283-1296, 2012 | 129 | 2012 |
| Stepwise pathogenic evolution of Mycobacterium abscessus JM Bryant, KP Brown, S Burbaud, I Everall, JM Belardinelli, ... Science 372 (6541), eabb8699, 2021 | 123 | 2021 |
| The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex SD Bentley, I Comas, JM Bryant, D Walker, NH Smith, SR Harris, ... PLoS neglected tropical diseases 6 (2), e1552, 2012 | 106 | 2012 |
| Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis JM Bryant, VC Thibault, DGE Smith, J McLuckie, I Heron, IA Sevilla, F Biet, ... BMC genomics 17, 1-12, 2016 | 97 | 2016 |
| Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak ME Török, S Reuter, J Bryant, CU Köser, SV Stinchcombe, B Nazareth, ... Journal of clinical microbiology 51 (2), 611-614, 2013 | 87 | 2013 |
| Detection of low frequency multi-drug resistance and novel putative maribavir resistance in immunocompromised pediatric patients with cytomegalovirus CJ Houldcroft, JM Bryant, DP Depledge, BK Margetts, J Simmonds, ... Frontiers in Microbiology 7, 1317, 2016 | 85 | 2016 |
| Dissemination of Mycobacterium abscessus via global transmission networks C Ruis, JM Bryant, SC Bell, R Thomson, RM Davidson, NA Hasan, ... Nature microbiology 6 (10), 1279-1288, 2021 | 67 | 2021 |
| Atypical AT skew in Firmicute genomes results from selection and not from mutation CA Charneski, F Honti, JM Bryant, LD Hurst, EJ Feil PLoS Genetics 7 (9), e1002283, 2011 | 45 | 2011 |
| Mycobacterium abscessus complex identification with matrix-assisted laser desorption ionization–time of flight mass spectrometry T Panagea, DH Pincus, D Grogono, M Jones, J Bryant, J Parkhill, ... Journal of Clinical Microbiology 53 (7), 2355-2358, 2015 | 39 | 2015 |