The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ... Nucleic acids research 41 (D1), D666-D675, 2013 | 701 | 2013 |
Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reeseiusing high-throughput genomic and proteomic analyses L dos Santos Castro, WR Pedersoli, ACC Antoniêto, AS Steindorff, ... Biotechnology for biofuels 7, 1-18, 2014 | 139 | 2014 |
Noise and robustness in prokaryotic regulatory networks R Silva-Rocha, V de Lorenzo Annual review of microbiology 64 (1), 257-275, 2010 | 129 | 2010 |
The post-genomic era of Trichoderma reesei: what's next? VK Gupta, AS Steindorff, RG de Paula, R Silva-Rocha, AR Mach-Aigner, ... Trends in Biotechnology 34 (12), 970-982, 2016 | 111 | 2016 |
Mining logic gates in prokaryotic transcriptional regulation networks R Silva-Rocha, V de Lorenzo FEBS letters 582 (8), 1237-1244, 2008 | 111 | 2008 |
The art of vector engineering: towards the construction of next‐generation genetic tools LC Nora, CA Westmann, L Martins‐Santana, LF Alves, LMO Monteiro, ... Microbial biotechnology 12 (1), 125-147, 2019 | 102 | 2019 |
Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis L dos Santos Castro, RG de Paula, ACC Antonieto, GF Persinoti, ... Frontiers in microbiology 7, 175, 2016 | 89 | 2016 |
Galectin-3 impacts Cryptococcus neoformans infection through direct antifungal effects F Almeida, JM Wolf, TA Da Silva, CM DeLeon-Rodriguez, CP Rezende, ... Nature communications 8 (1), 1968, 2017 | 84 | 2017 |
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening ME Guazzaroni, R Silva‐Rocha, RJ Ward Microbial Biotechnology 8 (1), 52-64, 2015 | 84 | 2015 |
Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis ACC Antoniêto, L dos Santos Castro, R Silva-Rocha, GF Persinoti, ... Fungal genetics and biology 73, 93-103, 2014 | 76 | 2014 |
The Aspergillus fumigatus CrzA Transcription Factor Activates Chitin Synthase Gene Expression during the Caspofungin Paradoxical Effect LNA Ries, MC Rocha, PA De Castro, R Silva-Rocha, RN Silva, FZ Freitas, ... MBio 8 (3), 10.1128/mbio. 00705-17, 2017 | 74 | 2017 |
The private life of environmental bacteria: pollutant biodegradation at the single cell level PI Nikel, R Silva‐Rocha, I Benedetti, V de Lorenzo Environmental microbiology 16 (3), 628-642, 2014 | 73 | 2014 |
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes J Kim, JC Oliveros, PI Nikel, V de Lorenzo, R Silva‐Rocha Environmental microbiology reports 5 (6), 883-891, 2013 | 68 | 2013 |
Loving the poison: the methylcitrate cycle and bacterial pathogenesis SK Dolan, A Wijaya, SM Geddis, DR Spring, R Silva-Rocha, M Welch Microbiology 164 (3), 251-259, 2018 | 64 | 2018 |
Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei L dos Santos Castro, ACC Antoniêto, WR Pedersoli, R Silva-Rocha, ... Gene Expression Patterns 14 (2), 88-95, 2014 | 60 | 2014 |
The impact of chromatin remodelling on cellulase expression in Trichoderma reesei TM Mello-de-Sousa, A Rassinger, ME Pucher, L dos Santos Castro, ... BMC genomics 16, 1-11, 2015 | 52 | 2015 |
A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides LC Nora, M Wehrs, J Kim, JF Cheng, A Tarver, BA Simmons, J Magnuson, ... Microbial Cell Factories 8, 117, 2019 | 48 | 2019 |
Microbial communities profiling in intensive care units expose limitations in current sanitary standards LF Ribeiro, EM Lopes, LT Kishi, LFC Ribeiro, MG Menegueti, GG Gaspar, ... Frontiers in Public Health, 2019 | 46 | 2019 |
Systems and synthetic biology approaches to engineer fungi for fine chemical production L Martins-Santana, LC Nora, A Sanches-Medeiros, GL Lovate, ... Frontiers in Bioengineering and Biotechnology 6, 117, 2018 | 45 | 2018 |
The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid M Koutinas, MC Lam, A Kiparissides, R Silva‐Rocha, M Godinho, ... Environmental microbiology 12 (6), 1705-1718, 2010 | 45 | 2010 |