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| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 17137 | 2019 |
| Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ... Proceedings of the national academy of sciences 108 (supplement_1), 4516-4522, 2011 | 9123 | 2011 |
| Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, J Huntley, N Fierer, ... The ISME journal 6 (8), 1621-1624, 2012 | 8979 | 2012 |
| Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013 | 8899 | 2013 |
| Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012 | 8555 | 2012 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6, 1-17, 2018 | 4313 | 2018 |
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| Soil bacterial and fungal communities across a pH gradient in an arable soil J Rousk, E Bååth, PC Brookes, CL Lauber, C Lozupone, JG Caporaso, ... The ISME journal 4 (10), 1340-1351, 2010 | 4009 | 2010 |
| PyNAST: a flexible tool for aligning sequences to a template alignment JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ... Bioinformatics 26 (2), 266-267, 2010 | 3885 | 2010 |
| Current understanding of the human microbiome JA Gilbert, MJ Blaser, JG Caporaso, JK Jansson, SV Lynch, R Knight Nature medicine 24 (4), 392-400, 2018 | 2454 | 2018 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2429 | 2017 |
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| Improved bacterial 16S rRNA gene (V4 and V4-5) and fungal internal transcribed spacer marker gene primers for microbial community surveys W Walters, ER Hyde, D Berg-Lyons, G Ackermann, G Humphrey, ... Msystems 1 (1), 10.1128/msystems. 00009-15, 2016 | 1654 | 2016 |
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| Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ... Microbiome 5, 1-16, 2017 | 1361 | 2017 |
| Moving pictures of the human microbiome JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ... Genome biology 12, 1-8, 2011 | 1349 | 2011 |
| Examining the global distribution of dominant archaeal populations in soil ST Bates, D Berg-Lyons, JG Caporaso, WA Walters, R Knight, N Fierer The ISME journal 5 (5), 908-917, 2011 | 1329 | 2011 |