| A unique dual activity amino acid hydroxylase in Toxoplasma gondii EA Gaskell, JE Smith, JW Pinney, DR Westhead, GA McConkey PloS one 4 (3), e4801, 2009 | 370 | 2009 |
| Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6 JD Humphries, A Byron, MD Bass, SE Craig, JW Pinney, D Knight, ... Science signaling 2 (87), ra51-ra51, 2009 | 286 | 2009 |
| Low-complexity regions within protein sequences have position-dependent roles A Coletta, JW Pinney, DYW Solís, J Marsh, SR Pettifer, TK Attwood BMC systems biology 4, 1-13, 2010 | 265 | 2010 |
| Protein-protein interaction networks and biology—what's the connection? L Hakes, JW Pinney, DL Robertson, SC Lovell Nature biotechnology 26 (1), 69-72, 2008 | 265 | 2008 |
| All duplicates are not equal: the difference between small-scale and genome duplication L Hakes, JW Pinney, SC Lovell, SG Oliver, DL Robertson Genome biology 8, 1-13, 2007 | 222 | 2007 |
| Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis IW Manfield, CH Jen, JW Pinney, I Michalopoulos, JR Bradford, ... Nucleic acids research 34 (suppl_2), W504-W509, 2006 | 187 | 2006 |
| Short Communication: Cataloguing the HIV Type 1 Human Protein Interaction Network RG Ptak, W Fu, BE Sanders-Beer, JE Dickerson, JW Pinney, ... AIDS research and human retroviruses 24 (12), 1497-1502, 2008 | 176 | 2008 |
| Petri Net representations in systems biology JW Pinney, DR Westhead, GA McConkey Biochemical Society Transactions 31 (6), 1513-1515, 2003 | 175 | 2003 |
| Protein–protein interactions in virus–host systems AF Brito, JW Pinney Frontiers in microbiology 8, 1557, 2017 | 155 | 2017 |
| metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella JW Pinney, MW Shirley, GA McConkey, DR Westhead Nucleic acids research 33 (4), 1399-1409, 2005 | 141 | 2005 |
| HIV–host interactions: a map of viral perturbation of the host system JW Pinney, JE Dickerson, W Fu, BE Sanders-Beer, RG Ptak, ... Aids 23 (5), 549-554, 2009 | 119 | 2009 |
| Bioinformatic analysis of the neprilysin (M13) family of peptidases reveals complex evolutionary and functional relationships ND Bland, JW Pinney, JE Thomas, AJ Turner, RE Isaac BMC evolutionary biology 8, 1-10, 2008 | 110 | 2008 |
| Betweenness-based decomposition methods for social and biological networks JW Pinney, DR Westhead Interdisciplinary statistics and bioinformatics 25, 87-90, 2006 | 99 | 2006 |
| The Arabidopsis co‐expression tool (act): a WWW‐based tool and database for microarray‐based gene expression analysis CH Jen, IW Manfield, I Michalopoulos, JW Pinney, WGT Willats, ... The Plant Journal 46 (2), 336-348, 2006 | 91 | 2006 |
| Annotating the Plasmodium genome and the enigma of the shikimate pathway GA McConkey, JW Pinney, DR Westhead, K Plueckhahn, TB Fitzpatrick, ... TRENDS in Parasitology 20 (2), 60-65, 2004 | 87 | 2004 |
| Identifying the important HIV-1 recombination breakpoints J Archer, JW Pinney, J Fan, E Simon-Loriere, EJ Arts, M Negroni, ... PLoS computational biology 4 (9), e1000178, 2008 | 83 | 2008 |
| The evolution of the phage shock protein response system: interplay between protein function, genomic organization, and system function M Huvet, T Toni, X Sheng, T Thorne, G Jovanovic, C Engl, M Buck, ... Molecular biology and evolution 28 (3), 1141-1155, 2011 | 74 | 2011 |
| Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems JI MacPherson, JE Dickerson, JW Pinney, DL Robertson PLoS computational biology 6 (7), e1000863, 2010 | 71 | 2010 |
| Reconstruction of ancestral protein interaction networks for the bZIP transcription factors JW Pinney, GD Amoutzias, M Rattray, DL Robertson Proceedings of the National Academy of Sciences 104 (51), 20449-20453, 2007 | 63 | 2007 |
| Metabolic reconstruction and analysis for parasite genomes JW Pinney, B Papp, C Hyland, L Wambua, DR Westhead, GA McConkey TRENDS in Parasitology 23 (11), 548-554, 2007 | 50 | 2007 |
