| Network-based stratification of tumor mutations M Hofree, JP Shen, H Carter, A Gross, T Ideker Nature methods 10 (11), 1108-1115, 2013 | 895 | 2013 |
| Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor JM Gendron, JL Pruneda-Paz, CJ Doherty, AM Gross, SE Kang, SA Kay Proceedings of the National Academy of Sciences 109 (8), 3167-3172, 2012 | 600 | 2012 |
| Methylome-wide analysis of chronic HIV infection reveals five-year increase in biological age and epigenetic targeting of HLA AM Gross, PA Jaeger, JF Kreisberg, K Licon, KL Jepsen, M Khosroheidari, ... Molecular cell 62 (2), 157-168, 2016 | 313 | 2016 |
| Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment T Wang, B Tsui, JF Kreisberg, NA Robertson, AM Gross, MK Yu, H Carter, ... Genome biology 18, 1-11, 2017 | 296 | 2017 |
| ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ... Bioinformatics 35 (22), 4754-4756, 2019 | 259 | 2019 |
| A network of conserved synthetic lethal interactions for exploration of precision cancer therapy R Srivas, JP Shen, CC Yang, SM Sun, J Li, AM Gross, J Jensen, K Licon, ... Molecular cell 63 (3), 514-525, 2016 | 168 | 2016 |
| ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data E Dolzhenko, MF Bennett, PA Richmond, B Trost, S Chen, JJFA Van Vugt, ... Genome biology 21, 1-14, 2020 | 160 | 2020 |
| Interaction landscape of inherited polymorphisms with somatic events in cancer H Carter, R Marty, M Hofree, AM Gross, J Jensen, KM Fisch, X Wu, ... Cancer discovery 7 (4), 410-423, 2017 | 153 | 2017 |
| Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss AM Gross, RK Orosco, JP Shen, AM Egloff, H Carter, M Hofree, ... Nature genetics 46 (9), 939-943, 2014 | 146 | 2014 |
| Copy-number variants in clinical genome sequencing: deployment and interpretation for rare and undiagnosed disease AM Gross, SS Ajay, V Rajan, C Brown, K Bluske, NJ Burns, A Chawla, ... Genetics in Medicine 21 (5), 1121-1130, 2019 | 116 | 2019 |
| Clinical whole genome sequencing as a first-tier test at a resource-limited dysmorphology clinic in Mexico A Scocchia, KM Wigby, D Masser-Frye, M Del Campo, CI Galarreta, ... NPJ genomic medicine 4 (1), 5, 2019 | 86 | 2019 |
| Multiple routes to oncogenesis are promoted by the human papillomavirus–host protein network M Eckhardt, W Zhang, AM Gross, J Von Dollen, JR Johnson, ... Cancer discovery 8 (11), 1474-1489, 2018 | 85 | 2018 |
| An automated 13.5 hour system for scalable diagnosis and acute management guidance for genetic diseases MJ Owen, S Lefebvre, C Hansen, CM Kunard, DP Dimmock, LD Smith, ... Nature communications 13 (1), 4057, 2022 | 52 | 2022 |
| Analysis of matched tumor and normal profiles reveals common transcriptional and epigenetic signals shared across cancer types AM Gross, JF Kreisberg, T Ideker PloS one 10 (11), e0142618, 2015 | 44 | 2015 |
| Matrix-Metalloproteinases in head and neck carcinoma–cancer genome atlas analysis and fluorescence imaging in mice SJ Hauff, SC Raju, RK Orosco, AM Gross, JA Diaz-Perez, E Savariar, ... Otolaryngology–Head and Neck Surgery 151 (4), 612-618, 2014 | 39 | 2014 |
| ERCC1 and TS expression as prognostic and predictive biomarkers in metastatic colon cancer MB Choueiri, JP Shen, AM Gross, JK Huang, T Ideker, P Fanta PloS one 10 (6), e0126898, 2015 | 37 | 2015 |
| Genome sequencing in persistently unsolved white matter disorders G Helman, BR Lajoie, J Crawford, A Takanohashi, M Walkiewicz, ... Annals of clinical and translational neurology 7 (1), 144-152, 2020 | 36 | 2020 |
| Combined TP53 mutation/3p loss correlates with decreased radiosensitivity and increased matrix-metalloproteinase activity in head and neck carcinoma SC Raju, SJ Hauff, AJ Lemieux, RK Orosco, AM Gross, LT Nguyen, ... Oral oncology 51 (5), 470-475, 2015 | 25 | 2015 |
| Chemogenetic profiling identifies RAD17 as synthetically lethal with checkpoint kinase inhibition JP Shen, R Srivas, A Gross, J Li, EJ Jaehnig, SM Sun, ... Oncotarget 6 (34), 35755, 2015 | 17 | 2015 |
| Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA C Muralidhara, AM Gross, RR Gutell, O Alter PloS one 6 (4), e18768, 2011 | 16 | 2011 |