| MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data DH Huson, S Beier, I Flade, A Górska, M El-Hadidi, S Mitra, ... PLoS computational biology 12 (6), e1004957, 2016 | 1650 | 2016 |
| Integrative analysis of environmental sequences using MEGAN4 DH Huson, S Mitra, HJ Ruscheweyh, N Weber, SC Schuster Genome research 21 (9), 1552-1560, 2011 | 1598 | 2011 |
| A randomised trial of the effect of omega-3 polyunsaturated fatty acid supplements on the human intestinal microbiota H Watson, S Mitra, FC Croden, M Taylor, HM Wood, SL Perry, JA Spencer, ... Gut 67 (11), 1974-1983, 2018 | 473 | 2018 |
| Effects of surgical and dietary weight loss therapy for obesity on gut microbiota composition and nutrient absorption A Damms-Machado, S Mitra, AE Schollenberger, KM Kramer, T Meile, ... BioMed research international 2015, 2015 | 327 | 2015 |
| Microbiota Supplementation with Bifidobacterium and Lactobacillus Modifies the Preterm Infant Gut Microbiota and Metabolome: An Observational Study C Alcon-Giner, MJ Dalby, S Caim, J Ketskemety, A Shaw, K Sim, ... Cell Reports Medicine 1 (5), 100077, 2020 | 200 | 2020 |
| Methods for comparative metagenomics DH Huson, DC Richter, S Mitra, AF Auch, SC Schuster BMC bioinformatics 10 (1), 1-10, 2009 | 191 | 2009 |
| Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG S Mitra, P Rupek, DC Richter, T Urich, JA Gilbert, F Meyer, A Wilke, ... BMC bioinformatics 12 (1), 1-8, 2011 | 189 | 2011 |
| Bifidobacterium breve reduces apoptotic epithelial cell shedding in an exopolysaccharide and MyD88-dependent manner KR Hughes, LC Harnisch, C Alcon-Giner, S Mitra, CJ Wright, ... Open biology 7 (1), 160155, 2017 | 122 | 2017 |
| In silico analyses of metagenomes from human atherosclerotic plaque samples S Mitra, DI Drautz-Moses, M Alhede, MT Maw, Y Liu, RW Purbojati, ... Microbiome 3 (1), 1-14, 2015 | 111 | 2015 |
| Introduction to the analysis of environmental sequences: metagenomics with MEGAN DH Huson, S Mitra Evolutionary Genomics, 415-429, 2012 | 102 | 2012 |
| Analysis of 16S rRNA environmental sequences using MEGAN S Mitra, M Stärk, DH Huson BMC genomics 12 (3), 1-7, 2011 | 99 | 2011 |
| Visual and statistical comparison of metagenomes S Mitra, B Klar, DH Huson Bioinformatics 25 (15), 1849-1855, 2009 | 96 | 2009 |
| Diversity and distribution of Archaea in the mangrove sediment of Sundarbans A Bhattacharyya, NS Majumder, P Basak, S Mukherji, D Roy, S Nag, ... Archaea 2015, 2015 | 73 | 2015 |
| Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing S Mitra, K Förster-Fromme, A Damms-Machado, T Scheurenbrand, ... BMC genomics 14 (5), 1-11, 2013 | 70 | 2013 |
| Comparison of multiple metagenomes using phylogenetic networks based on ecological indices S Mitra, JA Gilbert, D Field, DH Huson The ISME journal 4 (10), 1236-1242, 2010 | 69 | 2010 |
| Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants C Alcon-Giner, S Caim, S Mitra, J Ketskemety, U Wegmann, J Wain, ... BMC genomics 18 (1), 1-15, 2017 | 60 | 2017 |
| Ecogenomics reveals metals and land-use pressures on microbial communities in the waterways of a megacity G Saxena, EM Marzinelli, NN Naing, Z He, Y Liang, L Tom, S Mitra, ... Environmental science & technology 49 (3), 1462-1471, 2015 | 58 | 2015 |
| Mining and assessment of catabolic pathways in the metagenome of a common effluent treatment plant to induce the degradative capacity of biomass RP More, S Mitra, SC Raju, A Kapley, HJ Purohit Bioresource technology 153, 137-146, 2014 | 42 | 2014 |
| Perturbations of the gut microbiome in anti-CCP positive individuals at risk of developing rheumatoid arthritis CM Rooney, K Mankia, S Mitra, IB Moura, P Emery, MH Wilcox Rheumatology, 2020 | 33 | 2020 |
| Trehalose-induced remodelling of the human microbiota affects Clostridioides difficile infection outcome in an in vitro colonic model: a pilot study A Buckley, IB Moura, N Arai, W Spittal, E Clark, Y Nishida, HC Harris, ... Frontiers in Cellular and Infection Microbiology 11, 549, 2021 | 27 | 2021 |