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David A. Sivak
David A. Sivak
Professor and Canada Research Chair, Dept. of Physics, Simon Fraser U
Email verificata su sfu.ca - Home page
Titolo
Citata da
Citata da
Anno
Thermodynamic metrics and optimal paths
DA Sivak, GE Crooks
Physical Review Letters 108, 190602, 2012
3692012
Thermodynamics of prediction
S Still, DA Sivak, AJ Bell, GE Crooks
Physical review letters 109 (12), 120604, 2012
2932012
Controlling DNA capture and propagation through artificial nanopores
EH Trepagnier, A Radenovic, D Sivak, P Geissler, J Liphardt
Nano letters 7 (9), 2824-2830, 2007
1642007
Geometry of thermodynamic control
PR Zulkowski, DA Sivak, GE Crooks, MR DeWeese
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 86 (4 …, 2012
1502012
Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR
DA Keedy, H Van Den Bedem, DA Sivak, GA Petsko, D Ringe, MA Wilson, ...
Structure 22 (6), 899-910, 2014
1462014
Theory of nonequilibrium free energy transduction by molecular machines
AI Brown, DA Sivak
Chemical reviews 120 (1), 434-459, 2019
1262019
Probing the conformational distributions of subpersistence length DNA
AJ Mastroianni, DA Sivak, PL Geissler, AP Alivisatos
Biophysical journal 97 (5), 1408-1417, 2009
1052009
Transcription factor competition allows embryonic stem cells to distinguish authentic signals from noise
C Sokolik, Y Liu, D Bauer, J McPherson, M Broeker, G Heimberg, LS Qi, ...
Cell systems 1 (2), 117-129, 2015
912015
Using Nonequilibrium Fluctuation Theorems to Understand and Correct<? format?> Errors in Equilibrium and Nonequilibrium Simulations<? format?> of Discrete Langevin Dynamics
DA Sivak, JD Chodera, GE Crooks
Physical Review X 3 (1), 011007, 2013
822013
Time step rescaling recovers continuous-time dynamical properties for discrete-time Langevin integration of nonequilibrium systems
DA Sivak, JD Chodera, GE Crooks
The Journal of Physical Chemistry B 118 (24), 6466-6474, 2014
802014
Near-equilibrium measurements of nonequilibrium free energy
DA Sivak, GE Crooks
Physical Review Letters 108, 150601, 2012
652012
Thermodynamic geometry of minimum-dissipation driven barrier crossing
DA Sivak, GE Crooks
Physical Review E 94 (5), 052106, 2016
592016
E pluribus unum, no more: from one crystal, many conformations
RA Woldeyes, DA Sivak, JS Fraser
Current opinion in structural biology 28, 56-62, 2014
592014
Stochastic microbiome assembly depends on context
EW Jones, JM Carlson, DA Sivak, WB Ludington
Proceedings of the National Academy of Sciences 119 (7), e2115877119, 2022
562022
Maximizing power and velocity of an information engine
TK Saha, JNE Lucero, J Ehrich, DA Sivak, J Bechhoefer
Proceedings of the National Academy of Sciences 118 (20), e2023356118, 2021
532021
Using a system’s equilibrium behavior to reduce its energy dissipation in nonequilibrium processes
S Tafoya, SJ Large, S Liu, C Bustamante, DA Sivak
Proceedings of the National Academy of Sciences 116 (13), 5920-5924, 2019
512019
Quantifying configuration-sampling error in Langevin simulations of complex molecular systems
J Fass, DA Sivak, GE Crooks, KA Beauchamp, B Leimkuhler, JD Chodera
Entropy 20 (5), 318, 2018
502018
Optimal control of transitions between nonequilibrium steady states
PR Zulkowski, DA Sivak, MR DeWeese
PloS one 8 (12), e82754, 2013
462013
Allocating dissipation across a molecular machine cycle to maximize flux
AI Brown, DA Sivak
Proceedings of the National Academy of Sciences 114 (42), 11057-11062, 2017
452017
Optical measurement of mechanical forces inside short DNA loops
H Shroff, D Sivak, JJ Siegel, AL McEvoy, M Siu, A Spakowitz, PL Geissler, ...
Biophysical journal 94 (6), 2179-2186, 2008
402008
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
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